MGFR-package {MGFR} | R Documentation

## Marker Gene Finder in RNA-seq data

### Description

The package is designed to detect marker genes from RNA-seq data

### Details

Package: | MGFR
Type: | Package
Version: | 1.9.2
License: | GPL-3

### Author(s)

Khadija El Amrani Maintainer: Khadija El Amrani <khadija.el-amrani@charite.de>

### Examples

    data(ref.mat)
    res.list <- getMarkerGenes.rnaseq(ref.mat, class.vec=colnames(ref.mat), samples2compare="all", annotate=TRUE, gene.ids.type="ensembl", score.cutoff=1)
    names(res.list)
    ## show the first 20 markers of liver
    res.list[["liver_markers"]][1:20]

[Package MGFR version 1.10.1 Index]