getOrg {MAGeCKFlute} | R Documentation

## Determine the gene annotation package.

### Description

Determine the gene annotation package. for specific organism

### Usage

    getOrg(organism, update = FALSE)

### Arguments

`organism` | Character, KEGG species code, or the common species name, used to determine the gene annotation package. For all potential values check: data(bods); bods. Default org="hsa", and can also be "human" (case insensitive).
`update` | Boolean, indicating whether download recent annotation from NCBI.

### Value

A list containing three elements:

`organism` | species

`pkg`annotation package name `Symbol_Entrez`a data frame, mapping between gene symbol and entrez id

### Author(s)

Wubing Zhang

### Examples

    ann = getOrg("human")
    print(ann$pkg)

[Package MAGeCKFlute version 1.4.3 Index]