MACPET-package	MACPET
AnalysisStatistics	AnalysisStatistics
ConvertToPE_BAM	ConvertToPE_BAM
ConvertToPSelf	ConvertToPSelf
ConvertToPSelf.default	ConvertToPSelf
ConvertToPSelf.GInteractions	ConvertToPSelf
exportPeaks	exportPeaks
exportPeaks.default	exportPeaks
exportPeaks.PSFit	exportPeaks
GenomeMap	GenomeMap-class
GenomeMap-class	GenomeMap-class
GetShortestPath	GetShortestPath
GetShortestPath.default	GetShortestPath
GetShortestPath.GenomeMap	GetShortestPath
GetSignInteractions	GetSignInteractions
GetSignInteractions.default	GetSignInteractions
GetSignInteractions.GenomeMap	GetSignInteractions
MACPET	MACPET
MACPETUlt	MACPETUlt
MACPET_GenomeMapData.rda	MACPET_GenomeMapData.rda
MACPET_pinterData.rda	MACPET_pinterData.rda
MACPET_pintraData.rda	MACPET_pintraData.rda
MACPET_pselfData.rda	MACPET_pselfData.rda
MACPET_psfitData.rda	MACPET_psfitData.rda
PeaksToGRanges	PeaksToGRanges
PeaksToGRanges.default	PeaksToGRanges
PeaksToGRanges.PSFit	PeaksToGRanges
PeaksToNarrowPeak	PeaksToNarrowPeak
PeaksToNarrowPeak.default	PeaksToNarrowPeak
PeaksToNarrowPeak.PSFit	PeaksToNarrowPeak
PInter	PInter-class
PInter-class	PInter-class
PIntra	PIntra-class
PIntra-class	PIntra-class
plot	plot
plot.GenomeMap	plot
plot.PInter	plot
plot.PIntra	plot
plot.PSelf	plot
plot.PSFit	plot
PSelf	PSelf-class
PSelf-class	PSelf-class
PSFit	PSFit-class
PSFit-class	PSFit-class
SampleChIAPETData.bam	SampleChIAPETData.bam
SampleChIAPETDataRead_1.bam	SampleChIAPETDataRead_1.bam
SampleChIAPETDataRead_2.bam	SampleChIAPETDataRead_2.bam
summary	summary
summary.GenomeMap	summary
summary.PInter	summary
summary.PIntra	summary
summary.PSelf	summary
summary.PSFit	summary
TagsToGInteractions	TagsToGInteractions
TagsToGInteractions.default	TagsToGInteractions
TagsToGInteractions.PSFit	TagsToGInteractions
