commonSeqs {LymphoSeq} | R Documentation

## Common sequences in two or more samples

### Description

Creates a data frame of the common sequences in two or more samples, reporting their frequencies in each.

### Usage

    commonSeqs(samples, productive.aa)

### Arguments

`samples` | A character vector of two or more sample names in productive.aa.
`productive.aa` | A list of productive amino acid sequences generated by the LymphoSeq function productiveSeq where aggregate = "aminoAcid".

### Value

Returns a data frame of the common sequences between two or more files displaying their frequencies in each.

### See Also

`commonSeqsVenn`

### Examples

    file.path <- system.file("extdata", "TCRB_sequencing", package = "LymphoSeq")

    file.list <- readImmunoSeq(path = file.path)

    productive.aa <- productiveSeq(file.list = file.list, aggregate = "aminoAcid")

    commonSeqs(samples = c("TRB_Unsorted_0", "TRB_Unsorted_32"),
       productive.aa = productive.aa)

[Package LymphoSeq version 1.12.0 Index]