Package: LINC
Type: Package
Title: co-expression of lincRNAs and protein-coding genes
Version: 1.12.0
Date: 2017-03-18
Author: Manuel Goepferich, Carl Herrmann
Maintainer: Manuel Goepferich <manuel.goepferich@gmx.de>
Depends: R (>= 3.3.1), methods, stats
Description: This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes.
             Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the 'Guilty by Association' approach.
biocViews: Software, BiologicalQuestion, GeneRegulation, GeneExpression
License: Artistic-2.0
LinkingTo: Rcpp
Imports: Rcpp (>= 0.11.0), DOSE, ggtree, gridExtra, ape, grid, png,
        Biobase, sva, reshape2, utils, grDevices, org.Hs.eg.db,
        clusterProfiler, ggplot2, ReactomePA
VignetteBuilder: knitr
Suggests: RUnit, BiocGenerics, knitr, biomaRt
git_url: https://git.bioconductor.org/packages/LINC
git_branch: RELEASE_3_9
git_last_commit: c5e3d58
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: yes
Packaged: 2019-05-03 04:27:56 UTC; biocbuild
Built: R 3.6.0; i386-w64-mingw32; 2019-05-03 13:46:12 UTC; windows
Archs: i386, x64
