a27dbf2c0aaf004561ae0dfebc044e0e *DESCRIPTION
a17fa95104c91768d41f007f69b84f9e *INDEX
3e589f15cc0d92a0d2fd88625c6fbdef *Meta/Rd.rds
3927e0adbbea96cd183afffc854193f0 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
e455d16441efbc746eb3765f481affaf *Meta/hsearch.rds
b5d4d31b614f222bc3a12e3056223663 *Meta/links.rds
a8fa05810e000b8326d6ec020cf0e6d9 *Meta/nsInfo.rds
1d076878ea0603a9c3edf25bb67237b7 *Meta/package.rds
6df5d20b28cd4465c23f2a9215d20a56 *Meta/vignette.rds
33dcdf66a5988188e8f6519846492066 *NAMESPACE
e53b8b8cd3e02a6d9b7aca457ed08702 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/InPAS
dfb535b06668c60eca397e90f6e2f2fe *R/InPAS.rdb
9b6a367c1044d1ff3ab654f72365b6ca *R/InPAS.rdx
875c71c35a5962e7306813868c1c42bf *data/datalist
cafef1e05d73c03e50d90e87935f9ba0 *data/utr3.danRer10.rda
ad1b6f62495ed8cceb7981b4c5573152 *data/utr3.hg19.rda
12aa976301363411d421ba9a97ffbd63 *data/utr3.mm10.rda
5b81273fb6b03afdd0406eacb5f0c13d *doc/InPAS.R
c2bf3a9f910d284b3f4606d7e38d890c *doc/InPAS.Rmd
53fd59de468c0d8d815db12c4e011b34 *doc/InPAS.html
0015487fddc81e8e1f85316ea6ab499a *doc/index.html
fd39ad651f9d1366d13a0d741098d0b3 *extdata/Baf3.extract.bedgraph
5ca9fbb2ed92f46da01127f48a5188c0 *extdata/CPs.MAQC.rda
fa1e4fe6f1c33d7ca297fa12506a0d2a *extdata/UM15.extract.bedgraph
ceeb863c3251b708f8fc30ec7266b816 *extdata/coverage.MAQC.rda
30f138b6f554fb5e304e86e2d568663f *extdata/eset.MAQC.rda
74350e6c2359aed876a3af9b030509ae *extdata/polyA.rds
7960399b72ebfd0cace25f5682a04821 *help/AnIndex
542b3965643f2220ee79930d3de2bacf *help/InPAS.rdb
e0ec32a55b6f2b720938c866a14cdec3 *help/InPAS.rdx
707f4dcdf4cbb644e1e4ab9ff5b26060 *help/aliases.rds
e58d6b2b9713495e170532136af82b42 *help/paths.rds
405d360183769510f84fb99492ba134d *html/00Index.html
561d01e019d45d9c7ce1914658a88580 *html/CPsite_estimation.html
4361a372f572159b6c0b26ea88f99130 *html/CPsites.html
b9d70528d9011a1984b16d943eea8cbd *html/InPAS-package.html
1785e2cc3ba9fd668c2b8e0ff66ad418 *html/PAscore.html
f11af9904f44859259b489a80f4a120e *html/PAscore2.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
bb80e2c2e81be06b67c005006c95c144 *html/UTR3TotalCoverage.html
b987379b08ae754ba1488b8bd1f1a8ed *html/UTR3eSet.html
3d7fe0dbe64ee440b54025f69e1a3dd5 *html/UTR3usage.html
97f32d2195ab9ff91286f913888bddc6 *html/covThreshold.html
e30abed1c7e04c52d7beb3eaf1757400 *html/coverageFromBedGraph.html
ad121f6c5890d81b494d858d0a1ee742 *html/coverageRate.html
40dc5bb54c7a4d347005014babaee396 *html/depthWeight.html
9b917e45703a1477cd4f2fdd5b71fbe8 *html/distalAdj.html
de1439caaf788e3ce111a674d29fc66c *html/filterRes.html
c5b85089350c72973716a915af0cf392 *html/fisher.exact.test.html
111fc224c958277c0f8dcc72192806c0 *html/get.regions.coverage.html
c1b37fe5599acf44aeb528aeea48aad6 *html/getCov.html
60d4e99826b0cfee9ae443321fd8896f *html/getUTR3eSet.html
0e4f97aa7ef9f937d853ee0f01e0bba0 *html/getUTR3region.html
22976f331611b6612f4fb13d9c93c990 *html/inPAS.html
fdb7097c48ef5ceef1171684680a4f8a *html/lastCDSusage.html
8495ad712bd057445aaa41696baf68d2 *html/limmaAnalyze.html
292925b951a15ce9e28b02e9ded0dc57 *html/optimalSegmentation.html
e75a4eb4afd11e25f7cdac8afee5a237 *html/polishCPs.html
fd5f9399f686414e5a7c6804977bbfa9 *html/prepare4GSEA.html
43cc5876bac310e0d5057f9ecf7257d1 *html/proximalAdj.html
90f59a9b9a0f73ce6ba9ea8d9b898d57 *html/proximalAdjByCleanUpdTSeq.html
2ff3dba93608f0d8dc293b66a27e1c76 *html/proximalAdjByPWM.html
af782b4cc5ceada81eebb104be0ef168 *html/removeUTR3__UTR3.html
ebabce3105c866f062f12139b37a1d28 *html/searchDistalCPs.html
b8a3c575722a1af950e860327451757e *html/searchProximalCPs.html
14ce64b9f6dd4e785112f5e63238819d *html/seqLen.html
1d13c15128cdd12ad75eaf7857a743f7 *html/singleGroupAnalyze.html
b8371a93ea29cfd19ca717bead16baec *html/singleSampleAnalyze.html
6616a46c4ec2eb556b6d8659f615cc71 *html/sortGR.html
68854d7b46caa84659f8b8c1c07288dc *html/testUsage.html
1a3350ffcbd289ad0e74a16ba9913652 *html/totalCoverage.html
d4b946bf83b7fb59738413e8c15ac1df *html/trimSeqnames.html
3d1935c58056d536467be64b07c561b6 *html/usage4plot.html
1aa0438e7c4f079ac06ff34a1a9528cb *html/utr3.danRer10.html
7b92abde0ce7b4b6532faba533a492b6 *html/utr3.hg19.html
b7caaee3627c8299073b052426afa7fb *html/utr3.mm10.html
8ebc47a18f400fa25214e2047107cb22 *html/utr3Annotation.html
9ba2499f94ebf15168ac545118734a54 *html/utr3UsageEstimation.html
42de058b711fe4e31bf8f72cbba3f198 *html/valley.html
ec4a47facf5ba9646c54f44235ac8b46 *html/zScoreThrethold.html
9c0364f33917c3e3b5d5cfd94a33dd0d *unitTests/test_CPsites.R
34a65fd52a724977969eb6861dd86ed3 *unitTests/test_coverageFromBedGraph.R
3102a9d14d794b5356a01a5a326e407b *unitTests/test_getUTR3eSet.R
