lastCDSusage {InPAS} | R Documentation

## extract coverage of last CDS exon region

### Description

extract coverage of last CDS exon region

### Usage

    lastCDSusage(CDS, coverage, hugeData, BPPARAM=NULL, phmm=FALSE)

### Arguments

`CDS` | GRanges object of CDS
`coverage` | output of coverageFromBedGraph
`hugeData` | is it a huge dataset?
`BPPARAM` | An optional `BiocParallelParam` instance determining the parallel back-end to be used during evaluation, or a list of BiocParallelParam instances, to be applied in sequence for nested calls to bplapply.
`phmm` | prepare data for singleSample analysis?

### Value

the average coverage of last CDS for each transcript

### Author(s)

Jianhong Ou

[Package InPAS version 1.16.3 Index]