distalAdj {InPAS} | R Documentation

## adjust distal CP sites by cleanUpdTSeq

### Description

adjust distal CP sites by cleanUpdTSeq

### Usage

    distalAdj(distalCPs, classifier, classifier_cutoff, shift_range, genome, step=1)

### Arguments

`distalCPs` | the output of searchDistalCPs
`classifier` | cleanUpdTSeq classifier
`classifier_cutoff` | cutoff value of the classiffier
`shift_range` | the searching range for the better CP sites
`genome` | a BSgenome object
`step` | adjust step, default 1, means adjust by each base by cleanUpdTSeq.

### Value

a list could be input of `searchProximalCPs`

### Author(s)

Jianhong Ou

### See Also

`searchDistalCPs`, `PAscore2`

[Package InPAS version 1.16.3 Index]