summary.IdMapDiffCounts {IdMappingAnalysis} | R Documentation

## Get a compaund event counts summary report

### Description

Get a counts summary report where each row is a count of matches corresponding to a particular compound event

### Usage

    ## S3 method for class 'IdMapDiffCounts'
    summary(object, ...)

### Arguments

`...` | Not used

### Value

A `data.frame` with a single 'counts' column where each row is a count of matches corresponding to a particular compound event.

### Author(s)

Alex Lisovich, Roger Day

### See Also

For more information see `IdMapDiffCounts`.

### Examples

     #create IdMapDiffCounts object
     IDs<-IdMapBase$primaryIDs(examples$msmsExperimentSet);
     jointIdMap<-JointIdMap(examples$identDfList,primaryIDs=IDs);
     diffs<-jointIdMap$getDiff("NetAffx_F","DAVID_Q",verbose=TRUE);
     diffCounts<-IdMapDiffCounts(diffs);

     # get summary
     diffCounts$summary();

[Package IdMappingAnalysis version 1.28.0 Index]