plot.IdMapCounts {IdMappingAnalysis} | R Documentation

## Compute and plot the (inversed) ecdf for each ID Map count entry within the IdMapCounts object

### Description

Compute and plot the (inversed) ecdf for each ID Map count entry within the IdMapCounts object.

### Usage

    ## S3 method for class 'IdMapCounts'
    plot(x, idMapNames=NULL, complement=TRUE, log=TRUE, lineColors=NULL, pointSymbols=NULL, pointColors=NULL, cex.main=1.2, cex.lab=1, cex.axis=1, cex.legend=1, par.zoom=1, ...)

### Arguments

`idMapNames` | optional subset of ID Map names within the counts object for which ecdf's should be plotted. If `NULL` (default), the ecdf's for all ID Maps within the object are plotted.
`complement` | `logical` indicating wherether the complementary ecdf should be plotted The default is `TRUE`
`log` | `logical` indicating if log scale should be used. The default is `TRUE`.
`lineColors` | Recyclable vector of line colors. If `NULL` (default), a set of predefined colors is used.
`pointSymbols` | Character or numeric recyclable vector of symbols used to plotting points. If `NULL` (default), a set of predefined symbols is used.
`pointColors` | Recyclable vector of point colors. If NULL (default), a set of predefined colors is used.
`cex.main` | Font size for plot main title. Default is 1.2.
`cex.lab` | Font size for X and Y axis titles. Default is 1.
`cex.axis` | Font sixe for axis labels. Default is 1.
`cex.legend` | Legend font size. Default is 1.
`par.zoom` | graphics parameters zoom factor. Scales the graphical parameters like cex, lwd, mai etc.
`...` | Additional graphical parameters

### Author(s)

Alex Lisovich, Roger Day

### See Also

For more information see `IdMapCounts`.

### Examples

     jointIdMap<-JointIdMap(examples$identDfList);
     cnts<-jointIdMap$getCounts();
     cnts$plot();

[Package IdMappingAnalysis version 1.28.0 Index]