getCompoundGroups.IdMapDiffCounts {IdMappingAnalysis} | R Documentation

## Get counts for each compound event in IdMapDiffCounts

### Description

Get counts for each compound event in IdMapDiffCounts. Used internally within IdMapDiffCounts$plot().

### Usage

    ## S3 method for class 'IdMapDiffCounts'
    getCompoundGroups(this, verbose=FALSE, ...)

### Arguments

`verbose` | If `TRUE` enables diagnostic messages. Default is `FALSE`.
`...` | Not used

### Value

A list of data frames corresponding to a particular compaund event ('excess both', 'excess left' etc.) where each data frame has the same structure as a data frame within the IdMapDiffCounts object.

### Author(s)

Alex Lisovich, Roger Day

### See Also

For more information see `IdMapDiffCounts`.

### Examples

     #create IdMapDiffCounts object
     IDs<-IdMapBase$primaryIDs(examples$msmsExperimentSet);
     jointIdMap<-JointIdMap(examples$identDfList,primaryIDs=IDs);
     diffs<-jointIdMap$getDiff("NetAffx_F","DAVID_Q",verbose=TRUE);
     diffCounts<-IdMapDiffCounts(diffs);

     # get compound events
     groups<-diffCounts$getCompoundGroups();
     names(groups);
     groups$excess.both[1:10,];
     groups$same.list[1:10,];

[Package IdMappingAnalysis version 1.28.0 Index]