251034ab906e96b2f49f0386bf1d99be *CITATION
d4a76728cded492cb8479f6b394f94da *DESCRIPTION
39e9cb440f0c2e0979f545f6b5724fac *INDEX
ec5c18777e2e45f90563fb1a5f695e47 *Meta/Rd.rds
0686c99551693f17b36df99f4fc523f4 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
b5bc5aea06cd15f1b1c3bc6abe62671c *Meta/hsearch.rds
b1aeac0c16d19bd218f71d4a5154c79e *Meta/links.rds
0576c7f91f251e7487744204ecf393f4 *Meta/nsInfo.rds
58bb8019eab484b018ebf4b69961078e *Meta/package.rds
b16d1f491d1ba03c7705b1338ee49459 *Meta/vignette.rds
b786499c497b8178c22d513e8fb5367d *NAMESPACE
340ba11faaf3d202f0b0f7fec44b9867 *NEWS
25b3221358a7d45c99ff0813ff15ed02 *ProcessingRateDelay/server.R
5e4e66c4a7019a0be6973f5be62867b6 *ProcessingRateDelay/ui.R
5932464e8bd165dfba2b1a38852b08ab *ProcessingRateDelay/www/gif.gif
ebf0fc819595d631b8bf280c4b049940 *R/INSPEcT
ee6dcc27784fdd76c4e409a0ee8d1221 *R/INSPEcT.rdb
6c8810e87b246eff91eb74ebb64515f6 *R/INSPEcT.rdx
abceed457294056c8c9c19605ddf9501 *RNAdynamics/server.R
6233fee49ab0ca9c1834a36a22794b4e *RNAdynamics/ui.R
5932464e8bd165dfba2b1a38852b08ab *RNAdynamics/www/gif.gif
8ed831e685d71e27553395b8f77c1e32 *convert_ids.R
6882bed1c98f2800612e649300241cc2 *data/allcounts.RData
d379605e795823cef756cd143d41f4af *data/datalist
125a7b58cb4c7458a6c41333128e22d3 *data/featureWidths.RData
7d0f00bd1cc91077662de158904fa16b *data/libsizes.RData
0e0f0de2c0aaf4beb7eb9746e7026653 *data/matureSim2replicates.RData
58c8d2043e26afa5d526a956ccae58e6 *data/matureSim3replicates.RData
4051edfbb7c67f9209bea0939da7c107 *data/nascentSim2replicates.RData
1184ff5dea32e6f5464287e2eeecf463 *data/nascentSim3replicates.RData
3fb0feed4b2ecb19c0b75caff236e098 *doc/INSPEcT.R
e4d7e37a8a06a1ae9f2f31160207d083 *doc/INSPEcT.Rnw
ddd80999c05b32b11801357ffc2e1f67 *doc/INSPEcT.pdf
79b3153cd794e30c2f1e4b3222ec09d4 *doc/RNAdynamics.R
0d18a8e1e199794df53e418445b4913d *doc/RNAdynamics.Rnw
1f485392f7a909d5b5807f19b56a821d *doc/RNAdynamics.pdf
53f5f80b4e2ba7cd41e591ac290ab332 *doc/index.html
66ac71c995262c4386e490ed9ec34690 *extdata/bamRep1.bam
73dc8a7014a13a16520e377e718b5fbb *extdata/bamRep2.bam
29ca188315fe36e861e786a499a1b482 *extdata/bamRep3.bam
6da0037e8c472f33092d506371ef4627 *extdata/bamRep4.bam
ca8709a98b6bde74de54497188175a5c *help/AnIndex
bcb54dc2b4050fe08681d5737548faa1 *help/INSPEcT.rdb
e6f4fbf45b8e8bc67e8822691e47cfe9 *help/INSPEcT.rdx
2e9871e5cf6dbb07d1bd8f9072a62520 *help/aliases.rds
3f524d39381dc1b5419b376fd080337b *help/paths.rds
17e8e96b95b033ccf0e6b40afa2607a6 *html/00Index.html
bc92670fbd69ff719c6acd0e0d5acaf3 *html/AIC-INSPEcT-method.html
be4604b867c03197d60891642f9816aa *html/Extract.html
eeee341e1303c949d11799a70575b0c3 *html/INSPEcT-class.html
106d3129d3f5b0671d057ae11bb122fa *html/INSPEcT-shinyApps.html
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d038c3d1bf4758f3c0fe61247216be87 *html/INSPEcT_diffsteady-class.html
2f4e9a50dca4bc535d29b2c02b44cab5 *html/INSPEcT_model-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
4f9c6023bc52a253ead4f4619fd11b9b *html/allcounts.html
91678f81f7c83c2b368db9ae98460467 *html/chisqmodel.html
7dfc2d8dd55ee03b4c1f178da9f71de0 *html/chisqtest.html
86457b1dd516034297d0a1bec192d666 *html/combine.html
71a9bdd42cf513ec03ee0a99246c7025 *html/compareSteady.html
8c1a04cc8269bfb68ef696c168705a9c *html/compareSteadyNoNascent.html
f4539792ef7951d5a8fe500823164096 *html/dim-INSPEcT-method.html
6586560c7a63f660e83cea7c09afc6bc *html/featureNames-INSPEcT-method.html
29c361f653e2e986e53769da9121e30b *html/featureWidths.html
986abf040f5afaebd83c51d2476e01c4 *html/geneClass.html
2bd0363d41866ef9ff059396000cf8b5 *html/getModel.html
84f66d91ecad3c8cd86c9af759497cf2 *html/inHeatmap.html
db2916852294c8a614f30672dff537a0 *html/labeledSF.html
0771545e881e9fb9811785e6d91350e7 *html/libsizes.html
f4aabc4dab6dc74ed7d363ffd6c9cf27 *html/logLik.html
0944f1421ce839a1fff073cedac77295 *html/makeModelRates.html
681d837d8f046bd76eee85e051db15e1 *html/makeSimDataset.html
f6c9cadbda84c704e211bf4a740581cc *html/makeSimModel.html
5215a518dc8c9cda6739972118bb85f8 *html/modelRates.html
2af06112d7e24f964706919af590466d *html/modelSelection.html
41ec5d6561b4d4c37fd33716ea251bab *html/modelingParams.html
bd8fef37586700e40bb3392b729b057a *html/nGenes.html
c3b1508d72b436cd4cb40bf521952de5 *html/nTpts.html
b3a14c997f0d9c76a3e18f46a59c8d14 *html/newINSPEcT.html
507e4a02cacc0c58abcf8f104b3ad0c1 *html/plotGene.html
9b33ad381b9c3b034326da16e7d6badc *html/plotMA.html
8e54cdfbd9cc55a35c1a7ece02717b5e *html/processingDelay.html
511d6a0cab91e1f01000c6b4cb156cdb *html/quantifyExpressionsFromBAMs.html
cfbcfac355a851945d26c0b63bf736c4 *html/quantifyExpressionsFromTrAbundance.html
d5122cb3819fb00f55f0da7e3a007d5b *html/quantifyExpressionsFromTrCounts.html
e1fe4bd3d5133b7d6ddda3532a5939ce *html/ratePvals.html
049a7bbb829495351594cad173b5a055 *html/ratesFirstGuess.html
dff6013b38eff9302cc32457e8f7b8b0 *html/ratesFirstGuessVar.html
611318689d29da25bfb9c80f768af347 *html/removeModel.html
e19adff7bad8442a87c8c16a8eb5f0ac *html/rocCurve.html
06fa7b61321257f8e32b0fbb84e3a1ba *html/rocThresholds.html
8c5a33291b29003edac848e03abc9243 *html/sfPlot.html
6ce2e621b6d784130ad6b40581b8a31d *html/simData3rep_Nascent.html
78e239bc7bb3c853b8d04f4fac18db2c *html/simData3rep_NoNascent.html
e0363764928fd249372e72c96655df4d *html/simData4rep_Nascent.html
a15a68b4e400f7bbf54f9d87acec7d6c *html/simData4rep_NoNascent.html
ea2b19725a8f4587117f626953b08cf7 *html/split.html
b262b34b988f14a93b44767cdf45e328 *html/tpts.html
7bfcfdd1890609a7bff06227519e7467 *html/viewModelRates.html
860c68c29a725b1b9a25f47e0b036028 *nascentInspObj.rds
1ce6b3cc929f0d15e72bbbd62978fc01 *nascentInspObj10.rds
