prepareDatForDB {GladiaTOX} | R Documentation

## Assign default processing methods

### Description

This function is a wrapper to ease the creation of the dataframe containing data and metadata to be loaded in the database

### Usage

    prepareDatForDB(asid, dat)

### Arguments

`asid` | Integer, the asid value(s) to assign the default methods to
`dat` | Data.table containing metadata and data to load in DB

### Details

This function formats a dat table to be loaded in DB

### Value

Data table with data and metadata to store in database

### Examples

    ## Not run:
    ## Load sample data
    load(system.file("extdata", "data_for_vignette.rda", package="GladiaTOX"))

    # Build assay table
    assay <- buildAssayTab(plate, chnmap)

    ## Set study parameters
    std.nm <- "SampleStudy" # study name
    phs.nm <- "PhaseII" # study phase

    ## Delete previously loaded study data
    asid = gtoxLoadAsid(fld=c("asnm", "asph"), val=list(std.nm, phs.nm))$asid
    if(length(asid)>0){ deleteStudy(asid=asid) }

    ## Load annotation in gtoxDB
    loadAnnot(plate, assay, NULL)

    ## Get the created study ID
    asid = gtoxLoadAsid(fld = c("asnm", "asph"), val = list(std.nm, phs.nm))$asid

    ## Prepare and load data
    dat <- prepareDatForDB(asid, dat)

    ## End(Not run)

[Package GladiaTOX version 1.0.0 Index]