76b1e0277cdeca293af92a8fedcf9a45 *CITATION
5ad95fd7f78ac5674ba1c010fa880570 *DESCRIPTION
e28d972269a8009e8470b5f2170af6bc *INDEX
92e8827aa6d642c46736f41402498ea3 *Meta/Rd.rds
884372f97c5a5617dcdbe76ba820d452 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
f5273d5a900d5a7de0aae9828fb6ab41 *Meta/hsearch.rds
7eef34308b63db0ffedb963285e59035 *Meta/links.rds
9fa43388c03f9f682ce517af462b9908 *Meta/nsInfo.rds
16e988d872c34a6d7ebb30746373a64a *Meta/package.rds
9b3a05647d8d902dc8ed9a474eaf6648 *Meta/vignette.rds
79718fdf86de9ab7e626e590ba192864 *NAMESPACE
b83eae0cf23be06b9ff4e028d09f6383 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Genominator
215831c74113b95b4eba883d335c6c25 *R/Genominator.rdb
f561a6e52b6f94946cea1c0cd427cd75 *R/Genominator.rdx
fe2019eaaec3238deec714a7353433d1 *benchmark/idxTiming.R
92ffb0897b6ff67bf0d1970dc8427350 *data/chr1_yeast.rda
61a467dd982b7017a5fd9df7b4698b8c *data/yeastAnno.rda
9f6389f71fbffe74ddc5560740433b55 *data/yeastAnno.sources.rda
eee9d82b7d329f9d1fc6c3687a9ae6ce *doc/Genominator.R
97ca8f5c7a6831cfa5637f89910861d6 *doc/Genominator.Rnw
ba33097f30dca1a1a5073e796e0cf110 *doc/Genominator.pdf
584fac6f20fa92d02245ca34bf0fecd1 *doc/index.html
6d7a3961cb47d0368579b795c355015b *doc/plotting.R
ff6a3c5cbf66cd9c1efff3c23f777d0a *doc/plotting.Rnw
381f112e290d9a34d44ae1668ff45f97 *doc/plotting.pdf
41c1496165b1f5cbd57d872998a08356 *doc/withShortRead.R
596c1fc9a785f563ef59eb35f5815a90 *doc/withShortRead.Rnw
8ddd2223b5d59f2d6681e278c36659e5 *doc/withShortRead.pdf
a7e039d9604854b42b3034c0308be5a1 *help/AnIndex
d2ee4ed4b23af5f133759ef2bb30523c *help/Genominator.rdb
e3714f28b3c42ae4531cecbd5a4797f9 *help/Genominator.rdx
64d87318630334c60ed198928dbc82ee *help/aliases.rds
f8ff686fd8f1fb25fe519501a061ea64 *help/paths.rds
bae5a43f3221c52e929caad645d74a06 *html/00Index.html
c26598a6f8c910be96298ded1eeffc53 *html/ExpData.html
9261eefd49651161678a10e237ad2b58 *html/Genominator.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
fd907281f72105c4966c11ec1e9cd4f9 *html/addPrimingWeights.html
cedf2595473e70fc32a1b18580b66235 *html/aggregateExpData.html
562008056a0ff817e7959b25b18aeb40 *html/applyMapped.html
b4ca7ab99fd2f5b0a98bddb13a2483c5 *html/collapseExpData.html
3ffa21bac0c1f2bd7bf0f6d9c473e0a2 *html/computeCoverage.html
910088b0bd75e435828d84770b90c63f *html/computePrimingWeights.html
875c794b7b8fc340fe7ea267a924813d *html/getRegion.html
a46f5aa5bf4d3cefc821fea2ef5f55fc *html/importFromAlignedReads.html
6dba5f5e2ad1fbbbfe376474d9aa6745 *html/importToExpData.html
9e70738ec914446f3af9f40144996bc5 *html/joinExpData.html
7dc4a29b088faee055d6f1772a5b960c *html/makeGeneRepresentation.html
01cb2fb772016db4b50da49956121cee *html/mergeWithAnnotation.html
9b683d2f74c037a772728ac314e99bda *html/plot.genominator.coverage.html
20c4e9a90e5b78ef5eac867236818e82 *html/plot.genominator.goodness.of.fit.html
db742b8c5722ee061021f05c3a182ecd *html/regionGoodnessOfFit-methods.html
3362fdcfdf027d2b450318afb8d8146d *html/splitByAnnotation.html
e5fc61b91f146fc6ef5055522550c867 *html/summarizeByAnnotation.html
704e509016f228bd15e2bba0a6da5ff8 *html/summarizeExpData.html
70fb57b67f472c2a77beafb17dfe1779 *html/validAnnotation.html
30f82da1b336d9ad5fb4c0b9f5897a43 *html/yeastAnno.html
862763ecbcbc50dd334a17ec6bb2fd8a *sample.db
7e049f5b6c468d78ad7fa82b55affaa5 *scripts/consistency.txt
a015d1b9430e4a51085982e200c24fca *scripts/import-marioni.sh
b2dfdbaa5c85151db09947ab2550a468 *scripts/pipeline-marioni.R
ba96868b64604b6ba7b178a06503086e *scripts/pipeline-marioni.sh
a0bd50f01f6e2bfe251cea9c72983eaf *scripts/pipeline-yeast1.sh
53a9b60c55b249540ee08fb72eb2721c *scripts/pipeline.sh
0c0efe8a6c41be6a96d496a4b03ecf34 *scripts/reshape-marioni.pl
d204b6b7dfaf9baf5a6c65234e75e05d *scripts/reshape-yeast1.pl
c450860e7db68ed870a96137487b4bdd *scripts/sqlimport.sh
d9fefd32f56e205c966693c1e115c275 *scripts/temp.R
