networkFromGenes {GeneNetworkBuilder} | R Documentation

## Build network by a list of given genes

### Description

By providing a list of given genes, build a network for input of filterNetwork.

### Usage

    networkFromGenes(genes, interactionmap, level = 3)

### Arguments

`genes` | A vector of character for interested genes.
`interactionmap` | Transcription regulatory map. Column names of interactionmap must be 'from','to'
`level` | Depth of node path

### Value

a list with elements: rootgene: The nodes with maximal connetions. sifNetwork: Transcription regulatory network table.

### Examples

    data("ce.interactionmap")
    data("example.data")
    genes <- as.character(example.data$ce.bind$from)
    xx<-networkFromGenes(example.data$ce.bind, ce.interactionmap, level=2)

[Package GeneNetworkBuilder version 1.26.1 Index]