browseNetwork {GeneNetworkBuilder} | R Documentation

## browse network

### Description

plot network generated by polishNetwork

### Usage

    browseNetwork(gR = graphNEL(), layoutType = c("fdp", "dot", "neato",
      "twopi", "circo"), width = NULL, height = NULL, maxNodes = 500,
      ...)

### Arguments

`gR` | an object of graphNEL
`layoutType` | layout type. see GraphvizLayouts
`width` | width of the figure
`height` | height of the figure
`maxNodes` | max nodes number to plot. Because if there are two many nodes, the running time will be too long.
`...` | parameters used by GraphvizLayouts

### Value

An object of class htmlwidget that will intelligently print itself into HTML in a variety of contexts including the R console, within R Markdown documents, and within Shiny output bindings.

### Examples

    data("ce.miRNA.map")
    data("example.data")
    data("ce.interactionmap")
    data("ce.IDsMap")
    sifNetwork<-buildNetwork(example.data$ce.bind, ce.interactionmap, level=2)
    cifNetwork<-filterNetwork(rootgene=ce.IDsMap["DAF-16"], sifNetwork=sifNetwork,
      exprsData=uniqueExprsData(example.data$ce.exprData, "Max", condenseName='logFC'),
      mergeBy="symbols",
      miRNAlist=as.character(ce.miRNA.map[ , 1]), tolerance=1)
    gR<-polishNetwork(cifNetwork)
    browseNetwork(gR)

[Package GeneNetworkBuilder version 1.26.1 Index]