import("methods")

importFrom("ShortRead",readAligned)
importFrom("rtracklayer", export.bedGraph)
importFrom("data.table", data.table, tables, setkey, setnames, rbindlist)
importFrom("Rsamtools", scanBam)
importFrom("ggplot2", ggplot, aes, geom_density)
importFrom("parallel", mclapply)
importFrom("BiocManager", install)

import("BiocGenerics")
import("S4Vectors")
import("IRanges")
import("GenomicRanges")
import("Biostrings")
import("BSgenome")

export("pairReads")
export("mapReadsToRestrictionSites")
export("GOTHiC")
export("GOTHiChicup")
