Package: GOTHiC
Title: Binomial test for Hi-C data analysis
Description: This is a Hi-C analysis package using a cumulative
        binomial test to detect interactions between distal genomic
        loci that have significantly more reads than expected by chance
        in Hi-C experiments. It takes mapped paired NGS reads as input
        and gives back the list of significant interactions for a given
        bin size in the genome.
Version: 1.20.6
Date: 2013-06-07
Author: Borbala Mifsud and Robert Sugar
Maintainer: Borbala Mifsud <b.mifsud@qmul.ac.uk>
Depends: R (>= 3.5.0), methods, utils, GenomicRanges, Biostrings,
        BSgenome, data.table
Imports: BiocGenerics, S4Vectors (>= 0.9.38), IRanges, Rsamtools,
        ShortRead, rtracklayer, ggplot2, BiocManager
Suggests: HiCDataLymphoblast, parallel
License: GPL-3
biocViews: ImmunoOncology, Sequencing, Preprocessing, Epigenetics, HiC
git_url: https://git.bioconductor.org/packages/GOTHiC
git_branch: RELEASE_3_9
git_last_commit: 52adb11
git_last_commit_date: 2019-07-17
Date/Publication: 2019-09-24
NeedsCompilation: no
Packaged: 2019-09-25 02:37:50 UTC; biocbuild
Built: R 3.6.1; ; 2019-09-25 13:15:48 UTC; windows
