dataframe2geneSet {GIGSEA} | R Documentation

## dataframe2geneSet

### Description

dataframe2geneSet transforms a data frame (1term-1gene) into geneSets (1term-Ngenes).

### Usage

    dataframe2geneSet(term, gene, value = NULL)

### Arguments

`term` | a character value incidating the name of the column for the gene set (terms).
`gene` | a character value incidating the name of the column for the genes.
`value` | a vector of numeric values indicating the connectivity of between terms and genes. It could take either discrete values (0 and 1) or continuous values.

### Value

a data frame, comprising three vectors: term (like pathway names), geneset (a gene symbol list separate by comma), and value (either discrete or continuous separated by comma)

### Author(s)

Shijia Zhu, shijia.zhu@mssm.edu

### See Also

`geneSet2Net`; `geneSet2sparseMatrix`;

[Package GIGSEA version 1.2.0 Index]