gdcClinicalMerge {GDCRNATools} | R Documentation

## Merge clinical data

### Description

Merge clinical data in `.xml` files that are downloaded from GDC to a dataframe

### Usage

    gdcClinicalMerge(path, key.info = TRUE, organized = FALSE)

### Arguments

`path` | path to downloaded files for merging
`key.info` | logical, whether to return the key clinical information only. If `TRUE`, only clinical information such as age, stage, grade, overall survial, etc. will be returned
`organized` | logical, whether the clinical data have already been organized into a single folder (eg., data downloaded by the 'GenomicDataCommons' method are already organized). Default is `FALSE`.

### Value

A dataframe of clinical data with rows are patients and columns are clinical traits

### Author(s)

Ruidong Li and Han Qu

### Examples

    ####### Merge clinical data #######
    path <- 'Clinical/'
    ## Not run: clinicalDa <- gdcClinicalMerge(path=path, key.info=TRUE)

[Package GDCRNATools version 1.4.1 Index]