FunciSNPsummaryOverlaps {FunciSNP} | R Documentation

## Summarizes FunciSNP results by overlaps

### Description

This will summarize the total number of YAFSNPs identified by the number of biofeatures per tagSNP

### Usage

    FunciSNPsummaryOverlaps(dat, rsq = 0)

### Arguments

`dat` | FunciSNP data object
`rsq` | Rsquare value used to filter the summary report

### Note

NA

### Author(s)

Simon G. Coetzee (maintainer: scoetzee@gmail.com); Houtan Noushmehr, PhD (houtan@usp.br)

### References

SG. Coetzee, SK. Rhie, BP. Berman, GA. Coetzee and H. Noushmehr, FunciSNP: An R/Bioconductor Tool Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs., Nucleic Acids Research, In press, 2012 (doi:10.1093/nar/gks542).

### See Also

`getFSNPs`, `FunciSNPplot`, `FunciSNPAnnotateSummary`, `FunciSNPtable`, `FunciSNPbed`

### Examples

    data(glioma);
    glioma.anno <- FunciSNPAnnotateSummary(glioma);
    FunciSNPsummaryOverlaps(glioma.anno, rsq = 0.2);

[Package FunciSNP version 1.28.0 Index]