FunChIP-package         Clustering and Alignment of ChIP-Seq peaks
                        based on their shapes
GR100                   Peaks of a ChIP-seq experiment
bending_index           The elbow rule to define the proper number of
                        clusters.
choose_k                Choice of the final classification of peaks
cluster_peak            Clustering the peaks with the k-mean alignment
                        algorithm
compute_fragments_length
                        Computing the length of the fragments in the
                        .bam file.
distance_peak           Computing distance matrices among
                        spline-smoothed peaks and among their
                        derivatives.
peaks                   Coverage of a ChIP-Seq experiment
pileup_peak             Computing read counts on a GRanges object.
plot_peak               Plotting the peaks.
silhouette_plot         Return the silhouette index for clustered peaks
smooth_peak             Spline smoothing of the peak
summit_peak             Finding the summits of the peaks of the GRanges
                        object
