0f13879758690de13e08cdbbb64322d7 *CITATION
9ded529429514520755f805c25608305 *DESCRIPTION
757d3fc601278b9f0538f35b5eb1c5cc *INDEX
a54edc6e018cac222e0c3550c4418053 *Meta/Rd.rds
5e60c1d779fa661dea2c93a4d0c75518 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
d80518697b9c5e814b271c72b1aeb4b4 *Meta/hsearch.rds
fcc3ac9c2f83e0d53650cbe24bc0eca4 *Meta/links.rds
5b32e02eeb267d1805d591f9adb0a4bf *Meta/nsInfo.rds
af8e3270fcd8347e7b887697c3ff4325 *Meta/package.rds
60498b9f593ed23989993862fc717d0a *Meta/vignette.rds
72ee1921276696de34d6c12e559f07d4 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/FourCSeq
6c4d07db3cdb7fb038f54035bb5602bd *R/FourCSeq.rdb
186b885b4785c98e181e0b70e03419de *R/FourCSeq.rdx
e712884310e3ae0225ae27d9b4125f3d *data/datalist
0789fe12ab99c865a0bbfad6109dd70a *data/fc.rda
16ca8c7048b6cc6872ef0b622068a9bc *data/fcf.rda
2417ac37a22bc1cc547d5b39566dd8ba *doc/FourCSeq.R
d88c442490157761fcb294bb0f108775 *doc/FourCSeq.Rnw
07c0f47e7411afa7bd8c5d1fca911674 *doc/FourCSeq.pdf
988ed573102103c3c8a6351953ffddaa *doc/index.html
a47189afb85d952ce3f8c9029c5426ae *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam
e66069ad85339fc6d53c82fd15331b9e *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam.bai
71abbf35f0027ba4136a183be67105b3 *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam
b9ae7b5dd37a082cde997aeeecd30b8a *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam.bai
9995280b16d4dd17a2f6d469969d70bb *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam
0cc7e25225dcdea740c8eb34c00cdaee *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam.bai
fbe26ce19c28dabbf2e4091a1badd2d4 *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam
0d76977b2e36046cc176112776c5fa4e *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam.bai
d7271804926af64db2e5967c5dcd973b *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam
89cda3597b0911a9021eb51a8d5a5620 *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam.bai
26631755da6e4834f94337426858e559 *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam
36692e73c13be4c94e3c355b9a1a697b *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam.bai
255a24367518eb0f66ac409b42de54f3 *extdata/dm3_chr2L_1-6900.fa
22c667eddcaa6a93ba036d92d619b3d9 *extdata/primer.fa
52cdc74e647c9f0cd992a5b5c8e56263 *extdata/python/demultiplex.py
d3bca03dda0cf76445b40efb8a81d07f *help/AnIndex
bf0cf644806f528eab02c7dc1fff63bf *help/FourCSeq.rdb
7bbabd43bdc1cc47fe2c28fe95b96749 *help/FourCSeq.rdx
355bb05b19ec89c29d9c11c3d8dbd657 *help/aliases.rds
5612564c0f5edd35fffcab84977b98ef *help/paths.rds
b35dd44fa28e8fcfd121303da0359a19 *html/00Index.html
59f7ccd01471c657f8bbfd8c2af46f28 *html/FourC.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
9b09e92fc99e12e533e72aa82615b86e *html/addFragments.html
e566555db4fd886e8cabf0cf6aa69caf *html/addPeaks.html
64952a089731c7c3ce31c961d1f9f805 *html/addViewpointFrags.html
2b24e17cb2a50961aeb1f4f204526aeb *html/combineFragEnds.html
b7aaed5c2aca34b0e0479e8e1de37614 *html/countFragmentOverlaps.html
2d020a88b3fad3f05dc068463a6739a3 *html/countFragmentOverlapsSecondCutter.html
77a72dfe347f71a54a98ef8ab91b94f6 *html/distFitMonotone.html
c0af6ab0f50d3704b758197efd306297 *html/distFitMonotoneSymmetric.html
6177a3121ed5268f4c1ce7daa0ff8bfc *html/fc.html
9d0e60c23f3d3be5ac329f36dc6b46c2 *html/fcf.html
8b53b1d22412b7b40384a2ebe1e2a9fd *html/findViewpointFragments.html
88f3e104b08fd1a80507c422a36618b1 *html/getAllResults.html
c037079b3bc46dbe0e757430aa212bde *html/getDifferences.html
c247b16142c3cee05df21a587c64ed61 *html/getDistAroundVp.html
5d128b499b23093589384c8d83d76b2d *html/getNormalizationFactors.html
cab25c44c6c0ec9b8a0c5efb4eb71430 *html/getReferenceSeq.html
d45f3e3d647f2f52c5aee18405c94ec7 *html/getZScores.html
f7d2319a256aa2bd9941bc5713bf3c81 *html/normalizeRPM.html
ea162088c3142359d1cb7fdce45476c5 *html/plotDifferences.html
7680c571dc28d75f2ad13c58d3574cc3 *html/plotFits.html
8b969fba8dea38872c4a3fd16529d933 *html/plotNormalizationFactors.html
927e47124a5d84c4483cb1b19b45e132 *html/plotScatter.html
3391ff11ccc4661e4e78c697750b54ab *html/plotZScores.html
000ea6a66cb01f8b8abd23389e584e21 *html/smoothCounts.html
c4919e29af1bf2071618ee06507cc84d *html/smoothHitPerCent.html
3e55ce7b0cf8bfbdbc10559e15fd8124 *html/writeTrackFiles.html
