plotNormalizationFactors {FourCSeq} | R Documentation

## Plot the estimated normalization factors.

### Description

`plotNormalizationFactors` generates plots of the fits used to calculate the z-scores.

### Usage

    plotNormalizationFactors(object, dist = TRUE, sizeFactors = TRUE)

### Arguments

`object` | A `FourC` object, after successfully calling `getZScores`.
`dist` | If `TRUE` (default), the normalizationFactors are plotted as a function for distance from the viewpoint. Otherwise they are plotted as a function of ranks.
`sizeFactors` | If `TRUE`, sizeFactors are calculated and plotted as horizontal bars.

### Details

Plots are generated to visualize the results of the fits used to calculate the z-scores.

### Author(s)

Felix A. Klein, felix.klein@embl.de

### See Also

`FourC`, `getDifferences`, `estimateSizeFactors`

### Examples

    data(fcf, package="FourCSeq")

    fcf <- getDifferences(fcf)

    plotNormalizationFactors(fcf)

[Package FourCSeq version 1.18.0 Index]