orgNames {FindMyFriends} | R Documentation

## Get and set the names of organisms in the pangenome

### Description

These methods lets you manipulate the naming of organisms in the pangenome. By default organisms are named after the fasta file they are defined by, but this can be changed at will.

### Usage

    orgNames(object)

    orgNames(object) <- value

    ## S4 method for signature 'pgInMem'
    orgNames(object)

    ## S4 replacement method for signature 'pgInMem'
    orgNames(object) <- value

### Arguments

`object` | A pgVirtual subclass
`value` | A vector with new names - will be coerced to characters

### Value

In case of the getter a character vector with names

### Methods (by class)

- `pgInMem`: Get organism names for pgInMem subclasses

- `pgInMem`: Set organism names for pgInMem subclasses

### Note

Required for subclasses of pgVirtual in order to extend the class system of FindMyFriends

### Examples

    testPG <- .loadPgExample()
    orgNames(testPG)

    orgNames(testPG)[3] <- 'Organism 3'

[Package FindMyFriends version 1.14.0 Index]