orgStat {FindMyFriends} | R Documentation

## Calculate statistics about each organism

### Description

This method, much like codegroupStat calculates different statistics for each organism in the pangenome. Depending on the parameters the statistics are: number of genes, minimum length of gene, maximum length of gene standard deviation of gene lengths, residue frequency, number of gene groups and number of paralogues.

### Usage

    orgStat(object, ...)

    ## S4 method for signature 'pgVirtual'
    orgStat(object, subset, getFrequency = FALSE)

### Arguments

`object` | A pgVirtual subclass
`...` | parameters passed on.
`subset` | Name or indexes of organisms to include
`getFrequency` | logical. Should amino/nucleic acid frequency be calculated

### Value

A data.frame with a row per organism, with each statistic in a column

### Methods (by class)

- `pgVirtual`: Organism statistics for all pgVirtual subclasses

### Examples

    testPG <- .loadPgExample(withGroups=TRUE)

    orgStats <- orgStat(testPG)

[Package FindMyFriends version 1.14.0 Index]