U.hypergeom-class {FELLA} | R Documentation

## An internal S4 class for the user data of the hypergeometric over representation analysis

### Description

An internal S4 class for the user data of the hypergeometric over representation analysis

### Slots

`valid`

  Logical value; is the analysis valid?

`pvalues`

  Named numeric vector with p-values

`pathhits`

  Numeric named vector with the quantities "sample_success" for the hypergeometric distribution (#affected in path)

`pathbackground`

  Numeric named vector with the quantities "total_success" for the hypergeometric distribution (total in path)

`nbackground`

  Numeric value, number of compoudns in the background. Equivalently, number of rows for the hypergeometric binary matrix

`ninput`

  Numeric value, number of affected compounds matched to the rownames

[Package FELLA version 1.4.1 Index]