EventPointer_RNASeq_TranRef {EventPointer} | R Documentation

## EventPointer_RNASeq_TranRef

### Description

Statistical analysis of alternative splicing events with the output of GetPSI_FromTranRef

### Usage

    EventPointer_RNASeq_TranRef(Count_Matrix, Statistic = "LogFC", Design,
      Contrast)

### Arguments

`Count_Matrix` | The list containing the expression data taken from the ouput of GetPSI_FromTranRef
`Statistic` | The type of statistic to apply. Default = 'LogFC' (can be 'logFC, 'Dif_LogFC','DRS')
`Design` | The design matrix of the experiment.
`Contrast` | The Contrast matrix of the experiment.

### Value

a data.frame with the information of the names of the event, its p.values and the corresponding z.value. If there is more than one contrast, the function returns as many data.frames as number of contrast and all these data.frame are sotred in an unique list.

### Examples

       data(EventXtrans)
       data(PSIss)
       # Design and contrast matrix:

       Design <- matrix(c(1,1,1,1,0,0,1,1),nrow=4)
       Contrast <- matrix(c(0,1),nrow=2)

       # Statistical analysis:

       Fit <- EventPointer_RNASeq_TranRef(Count_Matrix =  PSIss$ExpEvs,
                                          Statistic = 'LogFC',Design = Design,
                                          Contrast = Contrast)

[Package EventPointer version 2.2.4 Index]