B2M                     Convert Beta value to M value.
ComBat.mc               A multi-processor wrapper for ComBat method.
M2B                     Convert M value to Beta value.
QCfilter                Sample or CpG probe filter.
QCinfo                  QC information.
bmiq.mc                 A multi-processor wrapper of BMIQ method
calc_detP               Calculate detection P values
ctrlsva                 Non-negative control surrogate variables
dupicc                  Methylation duplicates evaluation.
estimateCellProp        Cell Proportion Estimation
freqpoly                Frequency polygon plot
getB                    Extract Beta value.
getBeta                 Extract Beta value.
getCGinfo               CpG probe annotation inforamtion
getmeth                 Create a methDataSet
methDataSet-class       Class '"methDataSet"'
methyAge                Calculate Methylation Age
mpreprocess             A pipeline to perform background correction,
                        dye bias correction, inter-array normalization
                        and probe type bias correction for
                        HumanMethylation 450 and MethylationEPIC
                        BeadChip data.
multifreqpoly           Frequency polygon plot to display data
                        distribution.
nmode.mc                Estimating number of mode in methylaion data
                        for each probe.
norm.quantile           Quantile normalization.
normalize.quantile.450k
                        Quantile normalization.
oxBS.MLE                oxBS-MLE.
pcrplot                 Principal component regression plot
plotCtrl                Plot internal controls of 450K or
                        MethylationEPIC BeadChip.
predSex                 Estimating sample sex based on methylation data
preprocessENmix         The ENmix background correction for
                        HumanMethylation 450 and MethylationEPIC
                        BeadChip
rcp                     Regression on Correlated Probes(RCP)
readidat                Parsing IDAT files from Illumina methylation
                        arrays.
readmanifest            Parsing Illumina methylation arrays manifest
                        file.
relic                   RELIC dye bias correction method for Illumina
                        HumanMethylation450 and MethylationEPIC
                        BeadChip
rgDataSet-class         Class '"rgDataSet"'
rm.outlier              Filtering out outlier and/or low quality values
