A compilation of ENCODE metadata

Documentation for package ‘ENCODExplorer’ version 2.10.0

ENCODExplorer-package	ENCODExplorer
clean_column	Clean a single column of the data.frame
clean_table	Clean a data.frame that was produced by ENCODE REST API
createDesign	Create a design for the files associated with the result of a queryEncode, fuzzySearch research or a 'data.table' from createDesign.
downloadEncode	downloadEncode is used to download a serie of files or datasets using their accession.
download_dt_file	Downloads all files inside a data.table.
download_single_file	download_single_file Downloads a single file and checks if md5 checksums match.
ENCODExplorer	ENCODExplorer
fuzzySearch	Fuzzysearch is a searching function for a string or a list of string within the encode_df 'data.table'. For faster processing, pass encode_df object as database parameter.
get_encode_df	Returns a "light" version of ENCODE file metadata.
get_encode_df_demo	Get a demo encode_df
get_encode_df_full	Concatenates all available file metadata into a single data table.
queryEncode	Produce a subset of data following predefined criteria
queryEncodeGeneric	Produce a subset of data following predefined criteria.
searchEncode	Simulate a query on ENCODE website and return the result as a 'data.frame'
searchToquery	Convert searchEncode output in queryEncode output.
shinyEncode	Launch a shiny interface for ENCODExplorer