addDistNearestTSS {ELMER} | R Documentation

## Calculate the distance between probe and gene TSS

### Description

Calculate the distance between probe and gene TSS

### Usage

    addDistNearestTSS(data, NearGenes, genome, met.platform, cores = 1)

### Arguments

`data` | A multi Assay Experiment with both DNA methylation and gene Expression objects
`NearGenes` | A list or a data frame with the pairs gene probes
`genome` | Which genome build will be used: hg38 (default) or hg19.
`met.platform` | DNA methyaltion platform to retrieve data from: EPIC or 450K (default)
`cores` | Number fo cores to be used. Deafult: 1

### Examples

    ## Not run:
     data <- ELMER:::getdata("elmer.data.example")
      NearbyGenes <- GetNearGenes(data = data,
                                  probes = c("cg15924102", "cg24741609"),
                                  numFlankingGenes = 20)
      NearbyGenes <- addDistNearestTSS(data,NearbyGenes)

    ## End(Not run)

[Package ELMER version 2.8.3 Index]