getRNAseq {ELMER} | R Documentation

## getRNAseq to download all RNAseq data for a certain cancer type from TCGA.

### Description

getRNAseq is a function to download RNAseq data for all samples of a certain cancer type from TCGA

### Usage

    getRNAseq(disease, basedir = "./Data", genome = "hg38")

### Arguments

`disease` | A character specifies disease in TCGA such as BLCA
`basedir` | Download all RNA seq level 3 data for the specified disease.
`genome` | Data aligned against which genome of reference. Options: "hg19", "hg38" (default)

### Value

Download all RNA seq level 3 data for the specified disease.

[Package ELMER version 2.8.3 Index]