GetNormalizedMat {EBSeq} | R Documentation

## Calculate normalized expression matrix

### Description

'GetNormalizedMat' calculates the normalized expression matrix. (Note: this matrix is only used for visualization etc. EBTes and EBMultiTest request *un-adjusted* expressions and normalization factors.)

### Usage

    GetNormalizedMat(Data, Sizes)

### Arguments

`Data` | The data matrix with transcripts in rows and lanes in columns.
`Sizes` | A vector contains the normalization factor for each lane.

### Value

The function will return a normalized matrix.

### Author(s)

Ning Leng

### References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

### Examples

    data(GeneMat)
    str(GeneMat)
    Sizes = MedianNorm(GeneMat)
    NormData = GetNormalizedMat(GeneMat, Sizes)

[Package EBSeq version 1.24.0 Index]