391f8a3899bc796bbed73c5b3212a2d8 *CITATION
4957865c17e279ac93ddd013fba5dc75 *DESCRIPTION
ae644fcd49997d3efa297b417ab4100f *INDEX
061f13e7c0da5188dca8574ed1e93d50 *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
59fc2a1bbd108b6047686b8d57449280 *Meta/hsearch.rds
6b5f2e1e0013dd00d9de41898741ea40 *Meta/links.rds
8d6de162d8ef109ede3cdd3a9b8249cb *Meta/nsInfo.rds
89c2669a57419a7ad1463ba2e4e41f46 *Meta/package.rds
7e294f6b5d37022045dbe4b34f854927 *Meta/vignette.rds
11bec9a52fb45fc35a863eff91b538c7 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/DiffLogo
5c0779939cac31459a259267e133df10 *R/DiffLogo.rdb
84c0ad485ee6234fa4dd130c731dde37 *R/DiffLogo.rdx
e27c8b408c4ec4b44194743158c837c0 *doc/DiffLogoBasics.R
68c883ea98ff6663d211382a28a0038c *doc/DiffLogoBasics.Rnw
257408fe69e620ebba74bfe5bd2e3551 *doc/DiffLogoBasics.pdf
187d017a70ac056aad2a2f75d7648a88 *doc/index.html
9e64524098dcc3547b0a5033d37a3984 *extdata/alignments/F-box_bacteria.seq.fa
b638c19a42f513e456205f9f25794d2f *extdata/alignments/F-box_fungi.seq.fa
9c3c87fdf80fefc6cf3d20485aa94743 *extdata/alignments/F-box_metazoa.seq.fa
81c829501e6d19ac9ebe29dc3eecf303 *extdata/alignments/F-box_viridiplantae.seq.fa
45eea31652c9bf73aff2c145ab10ce97 *extdata/alignments/Mad.txt
707dbdd70ccc0cc51590f505e03f6a70 *extdata/alignments/Max.txt
b411ab2abc76e3437ccd6e818df31d54 *extdata/alignments/Myc.txt
d6422185297c2583f4419f467aec0574 *extdata/alignments/calamodulin_1.txt
4d0f44df6595197edd2b21d3549b4e57 *extdata/alignments/calamodulin_2.txt
2cec07f111c114b62e74dc5fda6d5b17 *extdata/alignments/phosphorylation_1.txt
610cceb5049e7cca41221bce75f23d95 *extdata/alignments/phosphorylation_2.txt
c78d0348b409bfaf488df306859666da *extdata/alignments/ubiquitination_1.txt
cdce4193c5fadfe94bc64bd20fd082b5 *extdata/alignments/ubiquitination_2.txt
8c38fdb2ea172dabd1ab4c45ddf5a4cb *extdata/homer/CTCF_SatelliteElement_Zf_CD4.motif
774f4bdd1a44d8c272a63396d7e9456c *extdata/homer/CTCF_Zf_CD4.motif
eaaac1b0e8624dce03d814d29ab7a8ac *extdata/homer/Max.motif
fd5d4c365e7e5de7f31f2adcc8df2a53 *extdata/homer/c-Myc.motif
ccc5a3fef2d1a0e70be046cce43dc22e *extdata/pfm/ctcf_jaspar.pfm
6093b56d5f72163054afddfa7e1013e3 *extdata/pwm/GM12878.pwm
ac0ed6904d023f00b38f953060434399 *extdata/pwm/H1-hESC.pwm
5c049781855e3d08d476eb735e438438 *extdata/pwm/HUVEC.pwm
56e78321b415f4e5f39cb226ddb3915c *extdata/pwm/HeLa-S3.pwm
f340a2bd526bb8cfe484a06f41e0923e *extdata/pwm/HepG2.pwm
a55a478ca869b172f945c7e004de9aba *extdata/pwm/K562.pwm
7256e36aa113e2ef2f25345cdf816682 *extdata/pwm/MCF7.pwm
d7bade5c657d185fc7c4b7e15199183b *extdata/pwm/NHEK.pwm
1e417b7456962e38375fdb5de6c67bb4 *extdata/pwm/ProgFib.pwm
d1d4f1b8a6f4aa46a8181c7d85f2d199 *help/AnIndex
3b8a84d3aebb042a15e00d931427c920 *help/DiffLogo.rdb
1bd8c3f571eb42e14e8d5381facaa79c *help/DiffLogo.rdx
bf47dd42efc482c1fa1e49299575defe *help/aliases.rds
264e14b45c4eba06e259aec435336d60 *help/paths.rds
e2093656277828abc57c4359f62c96b7 *html/00Index.html
e623bfebcd149205237da1b2faf2d40a *html/ASN.html
7f866b6fe67ef36afe24c68bd88d56f6 *html/Alphabet.html
2e76feb51ee3f5de87927ec3164d47ef *html/DNA.html
a1fb47eb2173457ea526b6419acb625a *html/FULL_ALPHABET.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
bd76cd03304c4f4c0784d65d9e961411 *html/RNA.html
678a6c0558e0f980c307fbe20b15c4a7 *html/alignPwmSets.html
6c723a5cc157a3134f515622700f4fec *html/baseDistributionPwm.html
80516b3cda3842778c38b032c5173d0b *html/calculatePvalue.html
b2ba6fa7364dba91bddbf3c6f8a6d952 *html/createDiffLogoObject.html
11735d1ec490a86452df395abfe36cdf *html/diffLogo.html
709f9a1fdae223d595bbdde19e75ab9b *html/diffLogoFromPwm.html
4003ac1a92b9f2107465231e8363f3af *html/diffLogoTable.html
a973a4af797319cf63f3ee70f164a359 *html/diffLogoTableConfiguration.html
02f6114ae2abc3a9d12c53827c28b0c6 *html/differenceOfICs.html
a0a6b32a3bdb39ff22b9c4cf69698e4a *html/drawDiffLogoTable.html
2f35857b74f186a3cbaa879c69a78509 *html/enrichDiffLogoObjectWithPvalues.html
51548056de3cc03aff317dc20a560a7b *html/enrichDiffLogoTableWithPvalues.html
d04c8be5b5ce89bcebbbfe055d266eac *html/extendPwmsFromAlignmentVector.html
390a3eb45b802afad028adca4cc4196d *html/getAlphabetFromCharacters.html
93771e3746c596595d60251913fd55e3 *html/getAlphabetFromSequences.html
b0530d82ea60fc6fe528dc504f143ec3 *html/getPwmFromAlignment.html
c962036e2cc4cb78958087bd99aa8db2 *html/getPwmFromAlignmentFile.html
b6306d1d227670bfafac03337d51bf30 *html/getPwmFromFastaFile.html
46a5c40b1f53cd2c29ef4e79811fcc0f *html/getPwmFromFile.html
e46064e24ddb25b50234931b61bf0e25 *html/getPwmFromHomerFile.html
dfc8c317260a037b95c3fe70259f4dd7 *html/getPwmFromPfmOrJasparFile.html
1536b9f53b859c5bfcbe66ef54a3765c *html/getPwmFromPwmFile.html
5877eaa78fc98bec315a642b75ae374f *html/getSequencesFromAlignmentFile.html
d0217f9a2240e25c442cf26586d2b68a *html/getSequencesFromFastaFile.html
798bf89ae8de31cd62f6798348104cef *html/informationContent.html
443532eb57cd43ad5fa76275f1e79c80 *html/localPwmAlignment.html
5e2c7e72f5ba0427584742278949d7e5 *html/lossOfAbsICDifferences.html
8fd26886e46b1f76f685dce5bc0697a5 *html/multipleLocalPwmsAlignment.html
67b2cbe605abeb52593a3ccb4b8c7532 *html/normalizePWM.html
8abd1e4fa272c4a1507ad6d94bfcb5cb *html/normalizedDifferenceOfProbabilities.html
a9f49fb7ef1a0e3a172978045bb1bd82 *html/prepareDiffLogoTable.html
cfffa6c37c987506c4aa2c554ac2a15c *html/probabilities.html
0b636c8b3f77605f9a9b7eacea1526cf *html/pwmDivergence.html
4327694bc28062d375b20513957f68e6 *html/pwmsDistanceMatrix.html
d0eda78398c122c0815ddcc2ea41efb7 *html/reverseAlignmentVector.html
28baffe553dc47a65a22b4ca2d714c20 *html/seqLogo.html
a868fa35a9328679fe59f78556784b6d *html/shannonDivergence.html
2b17a2741b08b7550bec708ab2b0727b *html/sumOfAbsICDifferences.html
42039844d4c926a1e5d8e43208b13748 *html/sumOfAbsProbabilityDifferences.html
5530201cec557fb72f6dc70d3135da7b *html/sumProbabilities.html
5353f27e9dedf92667e38518a2028d0a *html/switchDirection.html
90be093e5520357d50e51b03391edc86 *html/twoSetsAveragePwmDivergenceFromAlignmentVector.html
