gseDGN {DOSE} | R Documentation

## DisGeNET Gene Set Enrichment Analysis

### Description

perform gsea analysis

### Usage

    gseDGN(geneList, exponent = 1, nPerm = 1000, minGSSize = 10,
      maxGSSize = 500, pvalueCutoff = 0.05, pAdjustMethod = "BH",
      verbose = TRUE, seed = FALSE, by = "fgsea")

### Arguments

`geneList` | order ranked geneList
`exponent` | weight of each step
`nPerm` | permutation numbers
`minGSSize` | minimal size of each geneSet for analyzing
`maxGSSize` | maximal size of each geneSet for analyzing
`pvalueCutoff` | pvalue Cutoff
`pAdjustMethod` | p value adjustment method
`verbose` | print message or not
`seed` | logical
`by` | one of 'fgsea' or 'DOSE'

### Value

gseaResult object

### Author(s)

Yu Guangchuang

[Package DOSE version 3.10.2 Index]