clusterSim {DOSE} | R Documentation

## clusterSim

### Description

semantic similarity between two gene clusters

### Usage

    clusterSim(cluster1, cluster2, measure = "Wang", combine = "BMA")

### Arguments

`cluster1` | a vector of gene IDs
`cluster2` | another vector of gene IDs
`measure` | One of "Resnik", "Lin", "Rel", "Jiang" and "Wang" methods.
`combine` | One of "max", "avg", "rcmax", "BMA" methods, for combining

### Details

given two gene clusters, this function calculates semantic similarity between them.

### Value

similarity

### Author(s)

Yu Guangchuang

### Examples

    cluster1 <- c("835", "5261","241", "994")
    cluster2 <- c("307", "308", "317", "321", "506", "540", "378", "388", "396")
    clusterSim(cluster1, cluster2)

[Package DOSE version 3.10.2 Index]