DNAshapeR package for high-throughput prediction of DNA shape features

Description

The main functions in the package are getFasta and getShape. Shape predictions can be additionally plotted with plotShape. See package vignette for examples.

Details

All support questions should be posted to the Bioconductor support site: support.bioconductor.org, using DNAshapeR as a tag.

Author(s)

Tsu-Pei Chiu and Federico Comoglio

References

DNAshapeR reference:

T.-P. Chiu*, F. Comoglio*, T. Zhou, L. Yang, R. Paro, and R. Rohs: DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding (2016). Bioinformatics http://bioinformatics.oxfordjournals.org/content/early/2016/01/09/bioinformatics.btv735 (*equal contributor in alphabetic order)