# Generated by roxygen2 (4.1.0): do not edit by hand

export(analyseReadsInsideRegionsForCondition)
export(computeDMRs)
export(computeDMRsReplicates)
export(computeMethylationDataCoverage)
export(computeMethylationDataSpatialCorrelation)
export(computeMethylationProfile)
export(computeOverlapProfile)
export(filterDMRs)
export(getWholeChromosomes)
export(joinReplicates)
export(mergeDMRsIteratively)
export(plotLocalMethylationProfile)
export(plotMethylationDataCoverage)
export(plotMethylationDataSpatialCorrelation)
export(plotMethylationProfile)
export(plotMethylationProfileFromData)
export(plotOverlapProfile)
export(poolMethylationDatasets)
export(poolTwoMethylationDatasets)
export(readBismark)
export(readBismarkPool)
export(saveBismark)
import(betareg)
import(GenomicRanges)
import(IRanges)
import(Rcpp)
import(S4Vectors)
importFrom(betareg,betareg)
importFrom(RcppRoll,roll_sum)
importFrom(parallel,mclapply)
importFrom("grDevices", "colorRampPalette", "colors", "rainbow")
importFrom("graphics", "axis", "legend", "lines", "mtext", "par",
           "plot", "points", "rect", "segments", "text")
importFrom("methods", "is")
importFrom("stats", "fisher.test", "na.pass", "p.adjust", "pnorm")
importFrom("utils", "write.table")
