Package: DMCHMM
Type: Package
Title: Differentially Methylated CpG using Hidden Markov Model
Version: 1.6.0
Author: Farhad Shokoohi
Maintainer: Farhad Shokoohi <shokoohi@icloud.com>
Description: A pipeline for identifying differentially methylated CpG sites 
    using Hidden Markov Model in bisulfite sequencing data.
Depends: R (>= 3.5.0), SummarizedExperiment, methods, S4Vectors,
        BiocParallel, GenomicRanges, IRanges, fdrtool
Imports: utils, stats, grDevices, rtracklayer, multcomp, calibrate,
        graphics
Suggests: testthat, knitr
VignetteBuilder: knitr
biocViews: DifferentialMethylation, Sequencing, HiddenMarkovModel,
        Coverage
License: GPL-3
Date: 2018-09-02
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/shokoohi/DMCHMM/issues
RoxygenNote: 6.1.0
NeedsCompilation: no
Packaged: 2019-05-03 04:56:12 UTC; biocbuild
git_url: https://git.bioconductor.org/packages/DMCHMM
git_branch: RELEASE_3_9
git_last_commit: e1b82fe
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
Built: R 3.6.0; ; 2019-05-03 13:13:48 UTC; windows
