perGeneQValue {DEXSeq} | R Documentation

## Summarize per-exon p-values into per-gene q-values.

### Description

The use case for this function is the following analysis: given per-exon p-values for null hypothesis H0, we can determine the number of genes in which at least for one exon H0 is rejected. What is the associated false disovery rate?

### Usage

    perGeneQValue(object, p = "pvalue", method = perGeneQValueExact)

### Arguments

`object` | An `DEXSeqResults` object.
`p` | A character string indicating the name of the columns in `DEXSeqResults` from which to take the per-exon p-values.
`method` | Use the default value. This is for debugging only.

### Details

Details

### Value

A named numeric vector, values are per-gene q-values, names are gene.

### Examples

      data(pasillaDEXSeqDataSet, package="pasilla")
      dxd <- estimateSizeFactors( dxd )
      dxd <- estimateDispersions( dxd )
      dxd <- testForDEU( dxd )
      dxr <- DEXSeqResults( dxd )

      perGeneQValue(dxr)

[Package DEXSeq version 1.30.0 Index]