testForDEU {DEXSeq} | R Documentation

## Test for Differential Exon Usage.

### Description

This will perform a likelihood ratio test for differential exon usage. Internally, it calls the DESeq2 function `nbinomLRT`.

### Usage

      testForDEU( object,
         fullModel = design(object),
         reducedModel = ~ sample + exon,
         BPPARAM=SerialParam() )

### Arguments

`object` | A DEXSeqDataSet object.
`fullModel` | The full model formula
`reducedModel` | Null model formula.
`BPPARAM` | A "BiocParallelParam" instance. See `?bplapply` for details.

### Details

The information of the variables of the formulas should be present in the `colData` of the `DEXSeqDataSet` object.

### Value

A `DEXSeqDataSet` with slots filled with information about the test.

### Examples

      data(pasillaDEXSeqDataSet, package="pasilla")
      dxd <- estimateSizeFactors( dxd )
      dxd <- estimateDispersions( dxd )
      dxd <- testForDEU( dxd )

[Package DEXSeq version 1.30.0 Index]