# Differential Enrichment Scan 2

## Documentation for package ‘DEScan2’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

DEScan2-package | DEScan2
binnedCoverage | binnedCoverage
computeZ | computeZ
constructBedRanges | constructBedRanges
countFinalRegions | countFinalRegions
createGranges | createGranges
cutGRangesPerChromosome | cutGRangesPerChromosome
DEScan2 | DEScan2
divideEachSampleByChromosomes | divideEachSampleByChromosomes
finalRegions | finalRegions
findOverlapsOverSamples | findOverlapsOverSamples
findPeaks | findPeaks
fromSamplesToChrsGRangesList | fromSamplesToChrsGRangesList
keepRelevantChrs | keepRelevantChrs
readBamAsBed | readBamAsBed
readBedFile | readBedFile
readFilesAsGRangesList | readFilesAsGRangesList
RleListToRleMatrix | RleListToRleMatrix
saveGRangesAsBed | saveGRangesAsBed
saveGRangesAsTsv | saveGRangesAsTsv
setGRGenomeInfo | setGRGenomeInfo given a genome code (i.e. "mm9","mm10","hg19","hg38") retrieve the SeqInfo of that genome and assigns it to the input GRanges. Finally filters out those Infos not necessary to the GRanges.