1cc00c4cda5e6d81e7b60de12ba7f841 *CITATION
53e6a9569f0839d3b41283fb414bc989 *DESCRIPTION
40b332d4eb1688a0f94e73d97b7ec78a *INDEX
90a5a361e2ee669454212a33abfb94be *LICENCE
5d1f613091bbd2e9a40bcadee20708c1 *Meta/Rd.rds
a7a08530cb6d4cca5e2e16b22aa54d80 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
e2c955f88862698fb451fa482feb5308 *Meta/hsearch.rds
fa14a1ce7c8b687038a346ba4d6068a0 *Meta/links.rds
fee4c0ffc0fcfd924ecc82a4b0b85156 *Meta/nsInfo.rds
9e9dab37f0062dcdb4914476e9dbcfa8 *Meta/package.rds
63db9dc7ddf127b82c2625a68ea5e97e *Meta/vignette.rds
93404f1e03f601fc2c32d242d9e800d1 *NAMESPACE
c12d36dd28e1e039b5e59c0913566882 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/DChIPRep
4248a652c00a21ae2632bc44302ef8e2 *R/DChIPRep.rdb
ecaf627238dbf9c473219d2795dcefb3 *R/DChIPRep.rdx
586f4325fd5f9d00bdc71b4d7f6fa1f3 *REFERENCES.bib
992c42c4d6bc8ae7b0e9c5522233d258 *data/Rdata.rdb
ad3afbd8a5627f3f8a148a3dbde0d771 *data/Rdata.rds
2f2318341e3ade3003ede46497633b63 *data/Rdata.rdx
4adbc252e9da501efa24eb046611c147 *doc/DChIPRepVignette.R
24a72c306e605cbd39036bfae1fd10d8 *doc/DChIPRepVignette.Rmd
311e1031a3b754b680722f9827472709 *doc/DChIPRepVignette.html
2c62f2a90a4071b2cba63fcc82ed9876 *doc/index.html
fc6b649812959489432dea8b79ad7e22 *exec/DChIPRep.py
e4cbd1b84aec42dc495e9d358efe38f9 *extdata/BY_conf_K4me3_1__ORF_count.txt
a244a49d9e54aa8b33ea9c27b449efd1 *extdata/BY_conf_K4me3_2__ORF_count.txt
134e18cf2217983319a9c803ae32b5f5 *extdata/BY_conf_K4me3_3__ORF_count.txt
636d9760c80f3c27e35cd6ff2c502258 *extdata/BY_conf_WCE_1__ORF_count.txt
f80e4077caea40ea668467cc7e59b265 *extdata/BY_conf_WCE_2__ORF_count.txt
f96ab7e83afba76b18115f904419dd09 *extdata/BY_conf_WCE_3__ORF_count.txt
e0dc223dd119ca6e67266500c7999ffb *extdata/SET2_conf_K4me3_1__ORF_count.txt
ec40d79f0c6939b792189c9dfaf624af *extdata/SET2_conf_K4me3_2__ORF_count.txt
f6e1b7e21960f9fd9a6320b005722313 *extdata/SET2_conf_K4me3_3__ORF_count.txt
8a337a7280a1db1f92bad381b2044335 *extdata/SET2_conf_WCE_1__ORF_count.txt
9e6d5210fbb010db3774d1801a610d09 *extdata/SET2_conf_WCE_2__ORF_count.txt
cc1bb67c22e74d69d2a39a24b0df884a *extdata/SET2_conf_WCE_3__ORF_count.txt
652dfe5e622f513c20f360878f7a28a7 *extdata/subsampled_0001_pc_SRR2144628_WCE_bowtie2_mapped-only_XS-filt_no-dups.bam
f0467a9f4563a5157f6e0443ab746d26 *extdata/subsampled_0001_pc_SRR2144628_WCE_bowtie2_mapped-only_XS-filt_no-dups.bam.bai
b7823fd346f023e863fd023e6b87611f *help/AnIndex
1d2cf43617b944992afd40c89f128693 *help/DChIPRep.rdb
10307f874d5e9d36ecb9528d2cf6fdca *help/DChIPRep.rdx
59e98d44ca7dcd296e572be23f7619ae *help/aliases.rds
4c4bb2d591008a38755429bab8d10eb3 *help/paths.rds
4fe75d38d2ac886301b0749f97cd78d4 *html/00Index.html
24765801c5f8a058556b955d1629820c *html/DChIPRep.html
932de83d937f907c37806db407728e91 *html/DChIPRepResults.html
a633a345345677e0cb058e0679c25dee *html/DESeq2Data.html
f5be5eeeac99ad428d5d142d4ad30b9e *html/FDRresults.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
210c56e43c2d3403ba2c6808a10d1ddd *html/TSS_galonska.html
1e594a4c590d35d81c417c0b03cbfe43 *html/chip_galonska.html
24208f34c44d214df32cf9f51de54662 *html/exampleChipData.html
d3abbec98780abb564ce0d1f49fcb72e *html/exampleInputData.html
ed1855ad8f2339f8dfc7af8d4e2833a7 *html/exampleSampleTable.html
70ce2d4f9014c7b1600257e97b5a163d *html/getMATfromDataFrame.html
5883c432c950bd1121bb0ae5fd9fbe9b *html/importData.html
25a88d93e94b92f03e7d4c4d00899533 *html/importDataFromMatrices.html
93ab2c2e15d21991bbe4ae097ae126aa *html/importData_soGGi.html
9f1dc9ef4c1373d5a6f0b9d0105f0e79 *html/input_galonska.html
4f05bed21ae1b7eda549f05e6c84ca2d *html/plotProfiles.html
c99e8015e02e7d72fdfe94049371a629 *html/plotSignificance.html
908df1774083f7ae40b15d6e3c1dcd83 *html/resultsDChIPRep.html
f6fe9caf3f62cfc575cac7f4f4c8362b *html/robust_mean.html
e3d965c56952f69fda1c529e847b5f97 *html/runTesting.html
7404d3791f7e774661a1dfa7397fc6c7 *html/sample_table_galonska.html
a3949d4ca35ad5cc0580b986d23f6e0d *html/show.html
258aeb797f9d75e32d77df5891c31aa2 *html/summarizeCountsPerPosition.html
7bc395294775306e64f0e42b05e65a2e *html/testData.html
