wrapper.compareNormalizationD {DAPAR} | R Documentation

## Builds a plot from a dataframe

### Description

Wrapper to the function that plot to compare the quantitative proteomics data before and after normalization

### Usage

    wrapper.compareNormalizationD(objBefore, objAfter, condsForLegend = NULL,
      indData2Show = NULL, ...)

### Arguments

`objBefore` | A dataframe that contains quantitative data before normalization.
`objAfter` | A dataframe that contains quantitative data after normalization.
`condsForLegend` | A vector of the conditions (one condition per sample).
`indData2Show` | A vector of the indices of the columns to show in the plot. The indices are those of indices of the columns int the data.frame qDataBefore.
`...` | arguments for palette

### Value

A plot

### Author(s)

Samuel Wieczorek

### Examples

    require(DAPARdata)
    data(Exp1_R25_pept)
    conds <- Biobase::pData(Exp1_R25_pept)[,"Condition"]
    objAfter <- wrapper.normalizeD(Exp1_R25_pept, "QuantileCentering","within conditions")
    wrapper.compareNormalizationD(Exp1_R25_pept, objAfter, conds)

[Package DAPAR version 1.16.11 Index]