4ad19164b71f48a159aee0245eee9ad2 *CITATION
519915fda7f98ec4af1b1210aa9a8692 *DESCRIPTION
bdebbe6a515e01b9152333436324d824 *INDEX
3ad6eb24d3158f7a3d84115d7322e8a7 *Meta/Rd.rds
7bd659caff3cd27a25d24a7e9fcedb58 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
6e71295ffd8275c8b04d41772b81a6b0 *Meta/hsearch.rds
2097817caae4301427f738f538c7564b *Meta/links.rds
4b2f4ed4113744b55e4f3cd5c73308aa *Meta/nsInfo.rds
472d0378f2d8908d149e79a3e1a5f7aa *Meta/package.rds
8b109b1ab4146873da65a4cbbec3f174 *Meta/vignette.rds
86c0b651bfa817b420bdda5df31a7ac4 *NAMESPACE
590504cacc0084a282f24e3746aedeb4 *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/CrispRVariants
ccced7dc1c8144ab1686f3b6f991d5a6 *R/CrispRVariants.rdb
18d72da9ef4065a2f158116990ed0608 *R/CrispRVariants.rdx
823beda494d7bf6a0783b10bf1de7b6e *data/Rdata.rdb
cea29cd24d415acc96a1bfe281fd2a04 *data/Rdata.rds
55b88eb8aed7defad2344c4135060e77 *data/Rdata.rdx
80f8c2fbcf76e450958d2c32265b34fc *doc/index.html
c26bf75be321965449551d4dffa6de14 *doc/user_guide.R
030ad422de6cac5ecb1ef5c3ceaf6fc0 *doc/user_guide.Rmd
4446a014744fb9baae0060eeaa1be4b5 *doc/user_guide.pdf
65dcdf1d72c2cb6532b582faf9648242 *extdata/Danio_rerio.Zv9.73.gol.sqlite
3d09e19e1a84f4163a94c7ac41b4d7a1 *extdata/GRCz10_81_ptena_txdb.sqlite
cb32a40b50b777c9872e74844182b9cc *extdata/IM2033.ab1
31f41ba5b5f3ffe65a72638ac48d59ee *extdata/ab1/ptena/phenotype/embryo1/AB2001.ab1
87fbf13a52e1801266cb385c7919a4e9 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam
a5faefe3c25efbb5817f4235b9b7ce57 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam.bai
aa172362f53fb84dfc85ff43e8b58232 *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam
64f942fe93f6cb37549443b020be66bd *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam.bai
dbfe81d150812e6f46063d6e3af8a7e9 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam
eee2ae352b4a9fedb9ceff871687b1a8 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam.bai
236be679c9bc2a2f812ff382455e885c *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam
eada6440c415bffc39581741c9d0a790 *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam.bai
4a3d7a75593c3a87d833e05158e4f380 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam
c3644513e0f3ccf53022a838cac19fb1 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam.bai
a049fec3b3743cdbcab988593e07fe95 *extdata/bed/guide.bed
2d865f43e37fb89160b910b38bf2d5d6 *extdata/cntnap2b_test_data.fastq.gz
cf0e50eedb184b713c6f3d8a5d134b95 *extdata/cntnap2b_test_data_guide.bed
de83e1ebb8d157390a22a65d54f41f23 *extdata/cntnap2b_test_data_s.bam
f02d12f0ea6761b0eccc19df7a7a1b6c *extdata/gol_F1_clutch_1_embryo_1_s.bam
25956b49d20dd443e4ce9ca7e943796e *extdata/gol_F1_clutch_1_embryo_1_s.bam.bai
15010247fef191cf1d68d54cd20677da *extdata/gol_F1_clutch_1_embryo_2_s.bam
d0cdaeb0fda0197a6d62454d1c39b2ca *extdata/gol_F1_clutch_1_embryo_2_s.bam.bai
853c55081cbbc183fc46976430fa650e *extdata/gol_F1_clutch_1_embryo_3_s.bam
cc78c8e5d1d87f8571a6b71e1bd555ee *extdata/gol_F1_clutch_1_embryo_3_s.bam.bai
4cbc3ed5188a19125e6d50a27ff029e6 *extdata/gol_F1_clutch_1_embryo_4_s.bam
1ab0458554627ac4566378c536bc12a4 *extdata/gol_F1_clutch_1_embryo_4_s.bam.bai
9b27d523742d463169189d8c72060f7a *extdata/gol_F1_clutch_1_embryo_5_s.bam
6ef0cf85fe25ad4862a63f1aec0cf394 *extdata/gol_F1_clutch_1_embryo_5_s.bam.bai
411c8683cbd70b8d9cb9801ac5999b38 *extdata/gol_F1_clutch_1_embryo_6_s.bam
a1b074693d1b5052595a594e37b3ae96 *extdata/gol_F1_clutch_1_embryo_6_s.bam.bai
d677e388666d320a0dc80e187b4d30db *extdata/gol_F1_clutch_1_embryo_7_s.bam
f87f533910ac9896d9e4b797a885d18c *extdata/gol_F1_clutch_1_embryo_7_s.bam.bai
9e6c0eb2312197f90d0b2f352dda6b10 *extdata/gol_F1_clutch_1_embryo_8_s.bam
3a778946d9df16b7926f382258402dde *extdata/gol_F1_clutch_1_embryo_8_s.bam.bai
672eab0fa40051a31a81c9c174670eb8 *extdata/gol_F1_clutch_2_embryo_4_s.bam
1b157a9c4b418311efc6caabec3cfa38 *extdata/gol_F1_clutch_2_embryo_4_s.bam.bai
89b05c3e000a2e938ea38a1f90366ac2 *extdata/gol_F1_metadata.txt
01243899f4f39295d5efa23b382c3949 *extdata/gol_F1_metadata_small.txt
a8ef6a3063c96abb61e28f05667eb361 *extdata/metadata/metadata.xls
dcc5845212d1e1b64d1956793fb683f9 *extdata/ptena_GRCHz10_ref.rda
a569e6388cd16318dd2bad059cad710d *extdata/wtx_Sanger.png
af3584ce04196fafd561da7cd20608a7 *help/AnIndex
68508d356b7e66e0422314cc6b1fe3d4 *help/CrispRVariants.rdb
5c665794a2a32a07d1c40ca42955d0f4 *help/CrispRVariants.rdx
bab1f724c66e4036c3a116884f87a25f *help/aliases.rds
94915c94b26463055001806c1d7084f1 *help/paths.rds
5c6742ff3f1f069a447a891075c17a34 *html/00Index.html
bfbc5ca3ae28ff275e182c18e57d8f2a *html/CrisprRun-class.html
f42182bf1cf82807ba1e7fbec575fb1e *html/CrisprSet-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
072fe5af977e187f44dedb9dc911087f *html/abifToFastq.html
c86f22de89bacc7613ca66e0d2bad96d *html/addClipped.html
1e55acb9188134fff571f484e517683e *html/addCodonFrame.html
eac9c2934ac23e04270b59625ca62233 *html/alleleLabelsHelpers.html
2d770668a8f27783ecb54c4bf621fa19 *html/alleles.html
c12612e56240392f1e3d815b5d52b0f9 *html/alns.html
17ea2ffe3402481f9cb9c764f0201372 *html/annotateGenePlot.html
3407ff43e43765f6ec014e9af2573a11 *html/arrangePlots.html
5eb914c3432ba065d42a707a9d44afd5 *html/barplotAlleleFreqs.html
03c7e1d09e6e9b8e84c241bd9a4efa73 *html/collapsePairs.html
fa38eed43f9238b912e2d5d3200ca5a4 *html/consensusSeqs.html
25f7ee573f8cbdfe883b1f535e6b153f *html/dispatchDots.html
6a4e49450e0c3756f44abbe1ffee1ee0 *html/excludeFromBam.html
12c8115590a207b6916a9e7ff400543f *html/explodeCigarOpCombs.html
e29c61066fc2eb6fa2ea8ffa99f2ca2b *html/findChimeras.html
dc3b866297f823b8c05a31e23fdcc78d *html/findSNVs.html
0d1c2af12b137f851786487abd2e95e2 *html/getAxisCoords.html
3d239236096b842a7159f263ff399d65 *html/getChimeras.html
fe2c8001057dfdc54bfe2176c8a4f389 *html/getInsertionsTable.html
80df98157c9bbbb21618ecb62e5e5a64 *html/gol_clutch1.html
d2f0dde406b4167ee7ffb4f1d86e292f *html/indelCounts.html
3575e0ec3c4827038bb4f1d82a3b7b27 *html/indelLabels.html
070b43c6479afa59b5c5dbebbf611933 *html/intersperse.html
6c971e5834ecb81d115bf47c7f51b7fc *html/makeAlignmentTilePlot.html
058eb84bb7485f4956784a9bd1d7712b *html/mergeChimeras.html
61d54ede7869888b52905187c26e916e *html/mergeCrisprSets.html
a5366ab500f722584dab4ed8e8e6ac3e *html/mismatchLabels.html
0c6585b9c30f05280139623aa586d657 *html/mutationEfficiency.html
274520836f938a7ce03fd3609cf0da6f *html/narrowAlignments.html
bed1916d1d9173436e37f40c61ce0119 *html/plotAlignments.html
bf6b5643818535696d2c1c6ef8f17248 *html/plotChimeras.html
05bcd5b9d534f35b34d7cd58eea816c9 *html/plotFreqHeatmap.html
37abdbb342bb2ad2d1f205c54d83d18c *html/plotVariants.html
03008a6568e0bb016b1186aa59182abf *html/rcAlns.html
8e8c3ee3976db2fdaeb6cbd4e09fc788 *html/readTargetBam.html
f45db1d3ed1d604577ea63470c0809c3 *html/readsByPCRPrimer.html
6e85f3205ddd0a9e7bd74a9ab88e6d58 *html/readsToTarget.html
f28203eb9d8f15ab484ec41f2d8b62c9 *html/refFromAlns.html
f2182d20716bc6aade2ef43d1986aebf *html/reverseCigar.html
acfeb07fcf404f91ce6f48eb758bf514 *html/rmMultiPCRChimera.html
fdf03bd742320ac1a1c6930601c0195c *html/selectAlnRegionsHelpers.html
3ae467ddab4008aed46efb0ff72b3d1b *html/selectOps.html
7f078b6355d75647de4eeefbc4dbd7fb *html/seqsToAln.html
4a5b938244fb9905dff12f8e4f8f8fd2 *html/setDNATileColours.html
6a68dbbb8fe9e63498324a03b0dc7fee *html/setMismatchTileColours.html
74ff12f1c009d14eeffa455ed89d88f4 *html/transformAlnsToLong.html
42018a4dd06eb540027fc45aa61d324f *html/variantCounts.html
00640f0de548f14d39fe4c54ff0c1767 *html/writeFastq.html
