# Generated by roxygen2: do not edit by hand

export(EnsemblStyle)
export(UCSCStyle)
export(colByCopyNumber)
export(getBAFColumn)
export(getChrColumn)
export(getColumn)
export(getCopyNumberColors)
export(getCopyNumberColumn)
export(getEndColumn)
export(getIDColumn)
export(getLOHColumn)
export(getLRRColumn)
export(getPosColumn)
export(getSegmentValueColumn)
export(getStartColumn)
export(loadCopyNumberCalls)
export(loadCopyNumberCallsCNVkit)
export(loadCopyNumberCallsCnmops)
export(loadCopyNumberCallsDECoN)
export(loadCopyNumberCallsDNAcopy)
export(loadCopyNumberCallsPanelcnmops)
export(loadCopyNumberCallsSeg)
export(loadCopyNumberCallspennCNV)
export(loadSNPData)
export(loadSNPDataDNAcopy)
export(loadSNPDataFromVCF)
export(plotBAF)
export(plotCopyNumberCalls)
export(plotCopyNumberCallsAsLines)
export(plotCopyNumberSummary)
export(plotLRR)
export(prepareLabels)
export(removeNAs)
export(transformChr)
import(karyoploteR)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,start)
importFrom(IRanges,subsetByOverlaps)
importFrom(Rsamtools,TabixFile)
importFrom(SummarizedExperiment,rowRanges)
importFrom(VariantAnnotation,ScanVcfParam)
importFrom(VariantAnnotation,geno)
importFrom(VariantAnnotation,readVcf)
importFrom(VariantAnnotation,scanVcfHeader)
importFrom(cn.mops,segmentation)
importFrom(stats,rnorm)
importFrom(utils,read.table)
