6befb2f5fda749bad82e1515b6426646 *DESCRIPTION
a3e89c78babff42b4d655a317eef0d3a *INDEX
f36e74092364a773bbea76d488db4cf4 *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
b59bd18285b287cea28b64bd155a3394 *Meta/hsearch.rds
fba0717d0bcdcce5af62918b609a5696 *Meta/links.rds
9507309815e29b3a2d15fb483b1c8b97 *Meta/nsInfo.rds
07e9a471b459e17564278aad128b95ba *Meta/package.rds
c0054c7dc23d5ca3d8c94792840d48f7 *Meta/vignette.rds
96b0010c0a271fce3714deadab225865 *NAMESPACE
d41d8cd98f00b204e9800998ecf8427e *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/CopyNumberPlots
1da61885a2ead7d5f958ed5c02ea6fb2 *R/CopyNumberPlots.rdb
403677e90b92d26b2460f56e9e762f55 *R/CopyNumberPlots.rdx
1c55759d4039609cf208366527904d75 *doc/CopyNumberPlots.R
2ea09613c3512a9a27afcbf47cf6f8b6 *doc/CopyNumberPlots.Rmd
eb67c1689feae1c0b9f93011873f8b4a *doc/CopyNumberPlots.html
7a9b1e5148a20b54afee01ead91772ae *doc/index.html
008d3351fb8c41e512fba63b74543b6d *extdata/CNVkit_output.cns
4136f91f446256a68f86b278edab7c6f *extdata/DECoN_output.txt
28a35f96862a2d448574ec94c5273d70 *extdata/DNACopy_output.seg
9fc4fa5f4efc34e93e1a0a11c79099f8 *extdata/S1.rawdata.txt
fc90709b17e1210e4373edf2f0d4158d *extdata/S1.segments.txt
7147d6dc743cd42b66256bf8b1e4fce8 *extdata/S2.rawdata.txt
c712bb81fbac1d6b02135695a720369c *extdata/S2.segments.txt
5ffd79cbbcd65077001bff19b41992c8 *extdata/S3.rawdata.txt
d1a7ee3e9bc991c27b9fdc3fb56bde2a *extdata/S3.segments.txt
91efe67aa6d6d76729238e8c81ba5470 *extdata/SNP_example_data.csv
01f353d3efcb69fff9ab065d0ac38079 *extdata/cn.mops.segmentation.csv
5161203ed876bce6f1bc20c86a8cba6a *extdata/example.vcf.gz
644d3c7029cd7f5b79da1b9564a8e34d *extdata/example.vcf.gz.tbi
df5dc01ccd1592979225e3e2474c21ad *extdata/pennCNV.rawcnv
888d6b9933b6b99134e25ea40b80ac17 *extdata/snp.data_test.csv
8fbda5278bcab786685c0464c0f461e2 *extdata/snp.data_test2.csv
e9921285e590eb03622f0155c20c3e40 *help/AnIndex
0083ae4a1ad6e3b9cc3ba297af1df289 *help/CopyNumberPlots.rdb
3bcd60ecdc7b8f514b9d654e37823378 *help/CopyNumberPlots.rdx
582e1f6159b2e66d7f9dcb2b900c0312 *help/aliases.rds
39177624a0bfd3b862ebc612723d6aeb *help/paths.rds
d8923f74be8829a777ff2e1fbb18e443 *html/00Index.html
a85160ae41717c654e28bb3947080cab *html/EnsemblStyle.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
727502599d584f123af8364a23b1130d *html/UCSCStyle.html
73d2c7088fba6c7db11553071ce986a4 *html/colByCopyNumber.html
f7c9acbca88ee9800c6392ddc339e5dd *html/getBAFColumn.html
e9da6907f3861b996ef81230a92a57df *html/getChrColumn.html
70550fbf642e0094ac8c9c9af90dc57a *html/getColumn.html
ccfd015ab15e04ebfb6d4b0afb5745b5 *html/getCopyNumberColors.html
26aa9910c4f906f7b9320c308ab1430b *html/getCopyNumberColumn.html
4a4161e2f1553aab08a3beab176c7934 *html/getEndColumn.html
d9b0af4a777b729de8e37bbef9ca89e6 *html/getIDColumn.html
95414678c1dc6016dc0010692f37a8c6 *html/getLOHColumn.html
3971b911653f5713c6085fe0c746ef0f *html/getLRRColumn.html
103a14ca7c76b7550bfe4b64dccfa6ef *html/getPosColumn.html
0c3a9e6e3e922419cc2400097038aa4a *html/getSegmentValueColumn.html
80ab4f3da22bebbb50c66efc430e3bd4 *html/getStartColumn.html
5715c806f84796c5571d74946a45f619 *html/loadCopyNumberCalls.html
02cf3bb41a436628b42ac55ba78a11ef *html/loadCopyNumberCallsCNVkit.html
de26ff958726608bd11be10b097550be *html/loadCopyNumberCallsCnmops.html
ef6a42de267f5c0cf596c377deb2dccd *html/loadCopyNumberCallsDECoN.html
3e7458d5bb1cc8bcf2229c3731bc9054 *html/loadCopyNumberCallsDNAcopy.html
cfc17d5b2fd275d19755e8223b20107f *html/loadCopyNumberCallsPanelcnmops.html
dcdafd66d775d5b6f225da8c74878403 *html/loadCopyNumberCallsSeg.html
4705d43338b1288192d28f040365b0de *html/loadCopyNumberCallspennCNV.html
3b83b5862d886b0aad8cd4f6ff4220c5 *html/loadSNPData.html
5e1b271b62b21c3abea77f08ce3746a5 *html/loadSNPDataDNAcopy.html
dcc1c9f5a5b12de0c4a1a26442a4141c *html/loadSNPDataFromVCF.html
385f0076706f45b170ca9b0edccc1945 *html/plotBAF.html
abe14376d9f64849ee784cfb180949a6 *html/plotCopyNumberCalls.html
961d599eedff85517c742ae8e7f626b3 *html/plotCopyNumberCallsAsLines.html
2dbb5720ad1e880029e1e84794d8eb3b *html/plotCopyNumberSummary.html
615617612a50f4248dceb483f7023fd2 *html/plotLRR.html
fa54767ff3c86cfbfbfb10a60264347b *html/prepareLabels.html
3e27c49ea373ee1193ba73cc9230a8f9 *html/removeNAs.html
26a572aaca43d643c1158b0dd032b8e7 *html/transformChr.html
