calcCoGAPSStat {CoGAPS} | R Documentation

## calculate gene set statistics

### Description

calculates the gene set statistics for each column of A using a Z-score from the elements of the A matrix, the input gene set, and permutation tests

### Usage

    calcCoGAPSStat(object, GStoGenes, numPerm = 500)

    ## S4 method for signature 'CogapsResult'
    calcCoGAPSStat(object, GStoGenes, numPerm = 500)

### Arguments

`object` | an object of type CogapsResult
`GStoGenes` | data.frame or list with gene sets
`numPerm` | number of permutations for null

### Value

gene set statistics for each column of A

[Package CoGAPS version 3.4.1 Index]