2ab94a6733195eae1c19304bbdab987b *CITATION
f5b0824680fa6ef0ad5ad05bef342692 *DESCRIPTION
c8f08dfae8335eb3a2ece78e918b6cc2 *INDEX
a6a8224ddcc64c4ebedb691ee159fd31 *Meta/Rd.rds
92a2efbd9aaa1ea67be6c830802e80b6 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
a1aac29dd8e88c2e0c25cdcc66b023ae *Meta/hsearch.rds
d4a2cc73df5b1e4bb7e8c2fab31cdaed *Meta/links.rds
679a42fc3f6f6845070e78a8d7982d9e *Meta/nsInfo.rds
9e3461309600dbfe882aceaf062c74f7 *Meta/package.rds
84fb90d43a8fc9f344e059c7bc6c7bdf *Meta/vignette.rds
2c6989a4160f54e587717dc36930757a *NAMESPACE
c765d146b1d1232590a7c25262f9fdae *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Chicago
aa98641c497252d19249597fa1497847 *R/Chicago.rdb
82329b4a22c0100916ebb0a9a782cc5e *R/Chicago.rdx
be5c025eb1be7bfca21cf1dd10fac3fd *data/cdUnitTest.rda
8457791f37ca03b3893787812c10977c *doc/Chicago.R
91e03ffb9903f7c5da93bb38e80e90c5 *doc/Chicago.Rmd
7f5e075ecea3dcf709af28437fe75876 *doc/Chicago.html
37492ceff9179c57c963aac08c8ae0fd *doc/index.html
bc7339c0acdef5dd9556e786cd4108c8 *extdata/unitTestChIP/featuresmESC.txt
9a3ab07f0a9d5bca66f6e69a301384e2 *extdata/unitTestChIP/unitTestCTCF_ENCFF001ZQY.broadPeak.bed
50a37b4afbc409ab065ff1be6c0846a9 *extdata/unitTestChIP/unitTestH3K27me3_ENCFF001ZJO.broadPeak.bed
3a0b059f32523b4c2c5c5c200a9a916d *extdata/unitTestChIP/unitTestwgEncodeLicrHistoneEse14H3k27acME0129olaStdPk.broadPeak
f8fe5c018ac5126ad05082f3cf235030 *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k04me3StdPk.narrowPeak
77875efe530d66bbe85c38beb8edd4de *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k09me3StdPk.narrowPeak
d33768e766f58986b79f1786e9727304 *extdata/unitTestData/unitTest_mESC_rep1.chinput
176bdad1ce209180fdb676818094ab67 *extdata/unitTestData/unitTest_mESC_rep2.chinput
6d658c9192a9d45438425dd25195491a *extdata/unitTestDesign/unitTest.baitmap
0093ffe703303e3a5d0b6e1a0ef6d660 *extdata/unitTestDesign/unitTest.nbpb
b4bb6de635bb1205e293c61efb750efc *extdata/unitTestDesign/unitTest.npb
60a904049b15186b76b54b9f7fcae9c4 *extdata/unitTestDesign/unitTest.poe
d27a4f83d5f8dda72f4d99ebd8aa5742 *extdata/unitTestDesign/unitTest.rmap
b70696ed8eea9b1051fa36f50518ad8b *extdata/weights/GM12878-2reps.settings
bdaefdfe9a1bc018a82fd584a1b2e182 *extdata/weights/humanMacrophage-7reps.settings
80d6c48f96a472892d2fe4d313a80930 *extdata/weights/mESC-2reps.settings
b0627d2a2129963ae7d2639ad3a67bd3 *help/AnIndex
98740ec697c825a6ed66d6f2e195733b *help/Chicago.rdb
cd4d220d7e3b8e3279602d65546b2ca0 *help/Chicago.rdx
e7b9d45a6d997ed180536fc90565ff72 *help/aliases.rds
9fa3c1b260d73063966c5aa0612f9a66 *help/paths.rds
ccfe0cf62ddc3a16b291c725a7e70f56 *html/00Index.html
d31657f2a21142d33f1bceeafee383ff *html/Chicago-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
fa811db0f7730497d83332a0241c4c42 *html/cdUnitTest.html
1a1040859b6acae146e9729fac60b1b4 *html/chicagoData.html
2e7abe51f0831bd9a6b28b4a13ae5421 *html/chicagoPipeline.html
009c0e7717450e55958fe5baaeb10aca *html/copyCD.html
778bf24c6d91486be1234a25ec402e45 *html/defaultSettings.html
27cf100e8cd565372334ffa4c3039de1 *html/estimateBrownianComponent.html
a3865bdf65effcbb17ca0c1fdf4c776f *html/estimateDistFun.html
11dd739076635b709f257d0263d10957 *html/estimateTechnicalNoise.html
abd6926370c5c8e7b865c7515620b1d9 *html/exportResults.html
dbb89ed30f7c0d6029d2b6409b6b01a9 *html/getPvals.html
61575fc2d24b7ee6bc64dc234b0d0ba2 *html/getScores.html
8c590de50abb5dcf223b59964666b863 *html/getSkOnly.html
bc610cfbe8b77cfefde67da42295d8bd *html/mergeSamples.html
8fa496614bc694f8614bea9dfdf13fce *html/modifySettings.html
d24d378d6f26bfb1a5572f5a1a2947ff *html/normaliseBaits.html
eec07748cabd24d2c3290d680a2fbeb9 *html/normaliseOtherEnds.html
565ecf88e9b751845df62865f77d0bcc *html/overlapFragWithFeatures.html
b3dee183469aa35eee921defcde9a9bc *html/peakEnrichment4Features.html
9b8d74d633b69536467a279a7728ca97 *html/plotBaits.html
d1c7a5d7b02ed59427adc1e5893322e1 *html/plotDistFun.html
47724916e047067af6e698bad3d230f7 *html/readAndMerge.html
b50e7980441ccb121fe173b4ff0a87e0 *html/readSample.html
dd38c408dddf8ae6b4270525c6a077e9 *html/setExperiment.html
