5e3f36a1dba1bfe642c7a8a433cdb679 *CITATION
e871eb3f11304e72f0c1611d3bfe387e *DESCRIPTION
12346b410d158dcb9053b964ee23a8e2 *INDEX
3959b1435075ad646e88ab51bfb53b42 *Meta/Rd.rds
bdfc86b16292f902ff9ddc381f9a5573 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
ba6a2b6a5b5719ad4a47ff657f49d684 *Meta/hsearch.rds
379491401bbcc33f1baa90192c7c4cb8 *Meta/links.rds
dca50f205745e3108188affb7d5b32a1 *Meta/nsInfo.rds
45aed884bf6e464b6a84ad8a6372ec83 *Meta/package.rds
4212cdb838ed2de57c7cfd8479f40054 *Meta/vignette.rds
99d0696a34dc1068d0923ff5b4131de4 *NAMESPACE
298646595e6c0f1a503729f7a9e970af *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ChIPpeakAnno
2d29b65a65c2677ef18d52750f8e0f34 *R/ChIPpeakAnno.rdb
3f8d66a00b90e9bf012fdf6f78654847 *R/ChIPpeakAnno.rdx
cd9ddac3695cc465aca76c73c97dcb09 *data/ExonPlusUtr.human.GRCh37.rda
110fcc894c304d282317e08f94b81546 *data/HOT.spots.rda
8e9ecfe483bc1a3a9ddfa303eab223a5 *data/Peaks.Ste12.Replicate1.rda
ac3521f4b062658e1c513f51bce5487a *data/Peaks.Ste12.Replicate2.rda
129208051a1fe59d6eeed541cc4a0e28 *data/Peaks.Ste12.Replicate3.rda
1f72e6fdc6f424d51ef9a0a9fd47cde5 *data/TSS.human.GRCh37.rda
e8d4d3e3a91cd42adcf34ce018a65f55 *data/TSS.human.GRCh38.rda
a3adc6b31def1efc300fda0085005a5b *data/TSS.human.NCBI36.rda
0c3ef2fd321a47b9ed4d1a0ab63044ff *data/TSS.mouse.GRCm38.rda
f7a450954ac6d027fecb6780084976fb *data/TSS.mouse.NCBIM37.rda
7c615e60ca62bd77cfce469f30b28f7e *data/TSS.rat.RGSC3.4.rda
d1c0f799c823b46b4faf59a93f4f48db *data/TSS.rat.Rnor_5.0.rda
ba273cde7cce3343d816e625a393f9e2 *data/TSS.zebrafish.Zv8.rda
0b5cf3968954c7c36028169c301e5cfe *data/TSS.zebrafish.Zv9.rda
9f2f4ef11095f06779286d778e90b0f0 *data/annotatedPeak.rda
54d5fd6de4d6396e72b72670e9055c3b *data/datalist
483b9cad06866b432d5e0accb6f21e63 *data/enrichedGO.rda
91baeaa5f0b9dcd1507b22219aa41d88 *data/myPeakList.rda
1037ad6e69295171bcea7cbf40faad3a *data/wgEncodeTfbsV3.rda
8f901c1094b0f58bc06c3943cfef6d52 *doc/ChIPpeakAnno.R
ca61335bb6ea64e769d270c6790b04db *doc/ChIPpeakAnno.Rmd
cc9b0c2a092d2087c9114b4f038cb653 *doc/ChIPpeakAnno.html
23b1866d518c4df0235309e8c5134a04 *doc/FAQs.R
d8cc96a64fe7d0962b4e57db7f0c1c98 *doc/FAQs.Rmd
8da93b5375bccd0d5f9a91831f7db1e8 *doc/FAQs.html
1ea2ffbb93906e2986d732d41563f996 *doc/index.html
5c0dc33e542f2da6c74333e18585f6b2 *doc/pipeline.R
9df55e21e5fe3c9c01403f85301806bf *doc/pipeline.Rmd
330a52250a03000259715e430772232f *doc/pipeline.html
0c47aaa256a83e2f7dda405d2092c2be *doc/quickStart.R
959452ada663bbe77639b3bf778e13ae *doc/quickStart.Rmd
de7d9d34b75cbad1f5248e4d4eeaf26c *doc/quickStart.html
51a1074f5098d47f6e68834d05a0b052 *extdata/GFF_peaks.gff
bbd79f3bd4539df278d4d54a6a1c5b20 *extdata/GSM700906_AA86_vs_INPUT_WS170.bed
147f05d83bd1affe323c3166757e6d7f *extdata/GSM700907_DAF-12_TAP_vs_INPUT_#1_WS170.bed
622ff4061df9df9f9462f1fab72a63bd *extdata/GSM700908_DAF-12_TAP_vs_INPUT_#2_WS170.bed
70e0739a061fdcfdc7183e1cfd6b35a3 *extdata/GSM700909_DAF-12_TAP_vs_INPUT_#3_WS170.bed
070927932b507d9363c00f191c2a8c1f *extdata/MACS2_peaks.xls
3ba1b6678961b0d259ace72a677725ef *extdata/MACS_output.bed
c198dabb98b6a234cc5dedf2257eb76e *extdata/MACS_peaks.xls
ca1579eeffe79266a6a6d67285d06134 *extdata/TAF.bigWig
5c1ddb53e950aa7cee0c3d60f4b795c6 *extdata/TAF.broadPeak
405b734ee40b942b975426a8bb7a5905 *extdata/Tead4.bigWig
c519323cc98c34ce499847e01b126067 *extdata/Tead4.broadPeak
abf55e5af87269799387b8e534e54f2c *extdata/WS220.bed
9aa17877afeab3521a50d4be9a5afd8a *extdata/YY1.bigWig
3f580886a46268c7acb09d10cd49e0c8 *extdata/YY1.broadPeak
ed4e456fedcc44366e32b10701f8afb7 *extdata/annotatedPeaks.2.10.0.rds
20e9bb1fe398ccd866238d08461904ab *extdata/cvglist.rds
68ced04855781f8e713bbe6e579c20a3 *extdata/examplePattern.fa
37c4a0a35b151b8d32a1daee391c47a9 *extdata/gadem.rda
35fc20f4e80afc69c814b0548c1be2b6 *extdata/guide-seq-peaks.txt
07cb1ce6d32a969cf6d5fda3b5492559 *extdata/peaks.narrowPeak
c2b7832fbd74395028b2e09c880e5bf3 *extdata/peaks_hg19.bed
9cae92f469e5acdf71a6195ee3de7479 *extdata/ref.gtf
9d5062a07d7c3e9db2e515494f35487c *extdata/test.bed
84aec8ea2e86a9110d6b5a25d2078c5f *extdata/wgEncodeUmassDekker5CGm12878PkV2.bed.gz
9ed847f674315604026384f1d63b13a6 *help/AnIndex
71ff80fe4adde58817d841d23a861b1a *help/ChIPpeakAnno.rdb
ae217d6dd3e168841d5f8eead6c8654a *help/ChIPpeakAnno.rdx
d3d5ba69e840d452d236f44bdc17b501 *help/aliases.rds
64fbc368c810549c31ca4a3844f5e7e2 *help/paths.rds
5d351ae201f72b8593accc9f1e7b87a4 *html/00Index.html
18267c0964a8144ba200a726e0366855 *html/BED2RangedData.html
0c5a2dae0a18fbf5555dadb8e540ea22 *html/ChIPpeakAnno-deprecated.html
e66b0bffbf867072fa6fa752932de697 *html/ChIPpeakAnno-package.html
e17cd5da54e5560e5df03ba2c27f4a93 *html/ExonPlusUtr.human.GRCh37.html
6431b96e98b626aed0cb2b101ce246d0 *html/GFF2RangedData.html
b1e182d1a1cc1e75e9924ade98367e49 *html/HOT.spots.html
26f882b3b78a95925d3471ccddadfe7b *html/IDRfilter.html
580af30d51e07d71469a9cd1f111adce *html/Peaks.Ste12.Replicate1.html
9a4b06dbccdc8ad9e39f4f8edc80ef8b *html/Peaks.Ste12.Replicate2.html
e8c31164ec4e3758b5a22aeb0b0591e2 *html/Peaks.Ste12.Replicate3.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
3cf34ed75304807aa183c457d309d402 *html/TSS.human.GRCh37.html
b812a8d3cbb4fb1540548b4dcaeff1a5 *html/TSS.human.GRCh38.html
6e9941360c5178cbf740ee494d7e031a *html/TSS.human.NCBI36.html
7fe115af887bbb04f8cc373f057b4f57 *html/TSS.mouse.GRCm38.html
ace1c9117f3376b8d8f56211e81c30d6 *html/TSS.mouse.NCBIM37.html
066a20d4c287c0ad4539bd5d44212674 *html/TSS.rat.RGSC3.4.html
e857b4a8412b20cf6c4874900a77ecb4 *html/TSS.rat.Rnor_5.0.html
6ea47609c4721a031700875a20a0b571 *html/TSS.zebrafish.Zv8.html
939f179e3bdf8addff2769328153fe8b *html/TSS.zebrafish.Zv9.html
ab65d6ff2d61dd271fec13142a6bc0d4 *html/addAncestors.html
dccd52803e78011bf5786683721ae2e5 *html/addGeneIDs.html
e39996fb03c3c44fb8695c446576ad34 *html/addMetadata.html
a9667f09710666d066742e390e198af7 *html/annoGR.html
937b10deb0364eb749b5ff3fa83e8e91 *html/annoPeaks.html
6234c15d1445707b45dba6fc24a5e8c3 *html/annotatePeakInBatch.html
0c9e08160c5b88751f66c63e7335cf98 *html/annotatedPeak.html
c83e27636cf152437458f587bb85fa9a *html/assignChromosomeRegion.html
529ee4f4edef5a735fbf14d454674c37 *html/bdp.html
9fc0f0a384fcb2cf1651fc8acf980258 *html/binOverFeature.html
2f3467c47ebf0b1e899f8e388a5d788f *html/binOverGene.html
1ca1f64445fd796359c706cf7adce70a *html/binOverRegions.html
3d2266c2b1cc7d5e09ca55098049aaab *html/bindist.html
cf31c03095c8bc5bb9e43fc6f1c837a9 *html/condenseMatrixByColnames.html
e6792271b70ae62805c8c5e306f930d1 *html/convert2EntrezID.html
cb9a997e065ae9fe9e94ae2fb6deae25 *html/countPatternInSeqs.html
62a093fb0554d9aa2e851f7ad129f624 *html/cumulativePercentage.html
2687288927f4a6ac902540c36ce908af *html/egOrgMap.html
94984de9439d8b54a9cbecf68fb02599 *html/enrichedGO.html
00826b3a41be8618eeaf90ff8f87e0a4 *html/estFragmentLength.html
e39459342c953fdf6810630b94278a9e *html/estLibSize.html
0f28e0f357d9b673527691073d92e121 *html/featureAlignedDistribution.html
4ec3ac20e26b920b3b27ceb42703608d *html/featureAlignedExtentSignal.html
dfc96e93b86dd475057af472b0665b14 *html/featureAlignedHeatmap.html
5a05cbb0cbf343e95926a0f627f5dd85 *html/featureAlignedSignal.html
3f0507e0fd7181effb1137c5defac167 *html/findEnhancers.html
48daa149d67671f02120b3ba22d804ac *html/findOverlappingPeaks.html
121da6132f47bc8e9ffa4b8c70c669ce *html/findOverlapsOfPeaks.html
a47c7762b83362d6d40e9059c519795d *html/findVennCounts.html
fe3dfb7ccd95dbdd41a8de62c98fcbbb *html/getAllPeakSequence.html
190d0b65d34795b85707dfdcfa2e9244 *html/getAnnotation.html
350c49a0e98b1488d5311ead776f9a0a *html/getEnrichedGO.html
0fa5b5a34a723f8f9266616f535dfe12 *html/getEnrichedPATH.html
913d80d18ea19f7270ffc0a3f7a8e745 *html/getGeneSeq.html
63da1e498056bb460792dac683e44278 *html/getUniqueGOidCount.html
b0b7f8888faa3478f8e8dd544764ebea *html/getVennCounts.html
ef821cc5761fcec835df6301bff74ade *html/hyperGtest.html
51fd3a86154884cd0c6007c6815ad07a *html/makeVennDiagram.html
721e5d1e46bb83e2b823b23758001143 *html/mergePlusMinusPeaks.html
cbfd875aa52ebaf380ae971c7949cc68 *html/myPeakList.html
d0afe9ba9d5e29efafb5cdd03cf2f85b *html/oligoFrequency.html
34642a50ff388803f5fc8f6826aa9f81 *html/oligoSummary.html
27c963d565d753826110faa2f6a9f218 *html/peakPermTest.html
df3a23eac11e5e595ea9e68709b3b6e6 *html/peaksNearBDP.html
8d9bdbe438f0edc7e63cd05762523599 *html/permPool.html
a8f9e551404b2053e12610f2e18ec4b1 *html/pie1.html
bf2ffe540b92ea5958e540707cc952b5 *html/plotBinOverRegions.html
6f233f02142adf2fc51a8fce14a7851a *html/preparePool.html
07a24591a053fa960f65d7ebbc824dd9 *html/reCenterPeaks.html
9ed57cdd8bf40f60beb5254f8afc5782 *html/summarizeOverlapsByBins.html
0252418849c1b71dd59574297d941ea8 *html/summarizePatternInPeaks.html
6975f70e976a520241bb4e2aee529d8c *html/tileCount.html
307dfa4420691e95c82273c0c70769a2 *html/tileGRanges.html
3c43552f600d5eb168ba612d70c898d8 *html/toGRanges.html
8491a4c5da2e6fb4d073661ce108fb10 *html/translatePattern.html
cf7e1da3d7153e63ce629f38790de1aa *html/wgEncodeTfbsV3.html
3646977f7f726e4e3d21a30af91c118a *html/write2FASTA.html
415f9fc39b9b6d223f0cb786a074fc79 *html/xget.html
