0b9b887e498e36ac8be41f9202b9580d *CITATION
72673c60501dc7097b31f88d6b669f3a *DESCRIPTION
deba67fa4b3b385374111d7e9168e1cb *INDEX
a6b47df030acb9d280d3be8754090783 *Meta/Rd.rds
0fa9113e36df696b7d0a70c9d07a893e *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
22d57670b137cc041cbed53925b1b2ac *Meta/hsearch.rds
9deb1a070388912bf08351d626d9c188 *Meta/links.rds
989c0a283968b786dcffc487d504488d *Meta/nsInfo.rds
b6ddf69e05fd990d4c1b2a4c0ee8dcd8 *Meta/package.rds
44dcdb5ba841ea09616e309811b3956e *Meta/vignette.rds
38813fc19ea37c6f28dd46837f94c547 *NAMESPACE
22f1bb1598f60cb45e56a7e372f3ddaa *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ChIPanalyser
92b49c807f1bd14674a98c0031f96611 *R/ChIPanalyser.rdb
85e9cba67cc39b84e4f88ea0884ce0e7 *R/ChIPanalyser.rdx
9f0e896893ee26622c72f20f1b36fe74 *data/Rdata.rdb
b4d09e68b085451f476bbce03281cd8d *data/Rdata.rds
3d51a4de0747a7d0404484295cbc11ed *data/Rdata.rdx
9f2ac1c0e29e7bb4051ce5ec18cf18f8 *doc/ChIPanalyser.R
8856e3c798460965df05a2b6500db6f8 *doc/ChIPanalyser.Rmd
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9d6ba1483902d1aaeb112d11129ebaeb *extdata/BCDSlx.pfm
be89108c019f12597af573a079359e12 *help/AnIndex
42c3c573acb41b5dcd02c91174bd1d04 *help/ChIPanalyser.rdb
04ff53b158b3eaa70b14156f4c2874d2 *help/ChIPanalyser.rdx
c15f0cde78a371a6d145d57eb46d35b2 *help/aliases.rds
d77658a2fb0731cdee38e135de3c9b64 *help/paths.rds
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52bb724f79ea20534b9b8314fa8108c1 *html/AllSitesAboveThreshold.html
94add3d9aaa24f9a9b1beb7762839fd4 *html/BPFrequency.html
28e958f571d9fb0babf8690cca07ca85 *html/BPFrequency_-.html
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155401bdcf4a3a8545c11d99751b5739 *html/DNASequenceLength.html
94a11d3f065bafb7f88eb3420e010f1b *html/DNASequenceLength_-.html
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0d9f6d6b457c5930a12b9039672561f1 *html/NoAccess.html
3516faf69e6b46a186b468ec8cbc7789 *html/PFMFormat.html
0f654978e243a135c2e2d99df9206981 *html/PFMFormat_.html
14fda58cb59d6835e7f92af3fc9c001f *html/PWMThreshold.html
214a76c96f3ec8c57e0012caa68178dd *html/PWMThreshold_-.html
9cdd58a88cfc10c1335d960830e20aec *html/PWMpseudocount.html
391d9d2b7f57176ccc4781f4b7738002 *html/PWMpseudocount_-.html
ccd733245aa989e108c3404043bc26f6 *html/PositionFrequencyMatrix.html
64ea41c9e9be78153623d6c482aac924 *html/PositionFrequencyMatrix_-.html
7bf105ba521a7460da6c4fa397cf288a *html/PositionWeightMatrix.html
34743d7438fc6cb6f0272e61b076019a *html/PositionWeightMatrix_-.html
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a7a0ef9a2526c39c4a1e82933e93aa09 *html/ScalingFactorPWM.html
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35f0a55bca1e3239fde0a143e0a76960 *html/averageExpPWMScore.html
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7cd8fa7da46b17047cdfcfa6b2dd9d5b *html/backgroundSignal_-.html
59642b9b75ffd27ee3bf73f13c41eaf4 *html/boundMolecules.html
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fbe6b46bf15deeda39dd1b7b6e00d376 *html/chipMean.html
3b75e07a02bd5874e47052166b0ff618 *html/chipMean_-.html
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9696125614a97095dac5b2430de6562f *html/chipSd_-.html
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707d8fca9c2eeeef0c23ef5f3a3387bd *html/computeChipProfile.html
16cd07aa4e9e7eda5e34242760b2c94b *html/computeGenomeWidePWMScore.html
fada483ea322bdc1de20798b16cf2209 *html/computeOccupancy.html
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0521f7bb9a41dbc8713b366eef734e95 *html/computePWMScore.html
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f90b44b8e973fbd7f63dbc2da0abdcbf *html/genomicProfileParameters-class.html
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7afae9ea4a5887c0edec75060b4fdbfd *html/maxSignal.html
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2cc3903a16d5d8d79833cb80806bad77 *html/minPWMScore.html
3efa8a9f58d936ba01a02b1fe4181054 *html/naturalLog.html
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1371c39ef6b5dd7911afac9d2ebd1b24 *html/noOfSites.html
51d744826a93ee5d9f781fe26f1c845f *html/noOfSites_-.html
64225433ce319ac8ac720ed8da67edc0 *html/occupancyProfileParameters-class.html
955d7797aaa92a8f85f7865b3b6b3d47 *html/occupancyProfileParameters.html
d04303050089898e208b91512ec32fd5 *html/ploidy.html
ae07ad06a323446521281fab7b418d10 *html/ploidy_-.html
e9858f981a7c7dc863cfe61198ee680a *html/plotOccupancyProfile.html
42f6f5e7572b7424ba5a7561fbe2b991 *html/plotOptimalHeatMaps.html
74e613d88cee717782bf8d1f6dc55f63 *html/processingChIPseq.html
49ae14bb6099416e9bf63255bf8c806c *html/profileAccuracyEstimate.html
74eca88da8b999666bb6e43700070681 *html/removeBackground.html
2bc66de9fcb423716be8159da1ad1a01 *html/removeBackground_-.html
94ed5eb352618dbf2b6d0aea40786aad *html/searchSites.html
b0cc114348fcd49365d6f119c714a7c6 *html/stepSize.html
f6ef5700785f40051538db5c29215239 *html/stepSize_-.html
dbaa6dbf28ba15b79cff3feb11c68c90 *html/strandRule.html
343600d6700f3a8548a0c2a66f7a05e7 *html/strandRule_-.html
06d419a745d2daab8b3e207fb5ddc215 *html/whichstrand.html
06333fca75b5f2db0d076daf7a616b91 *html/whichstrand_-.html
44ed2ccc83d93602cbf6b70fbe8a1248 *unitTests/GPPWithPFM.rda
1688b10abe4422ac5eab1497ecb38edf *unitTests/OccupancyAccess.rda
8fd1ec7893511fb0ea9bf454380848ff *unitTests/OccupancyNoAccess.rda
7e02b4c5d17e18806627eafd47917c49 *unitTests/PWMScoreAccess.rda
4249c273bbb2e75141c16e2f5b81d40d *unitTests/PWMScoreNoAccess.rda
268749383a8d2936cb89e0ee7eb90451 *unitTests/genomeWideScoringAccess.rda
247410aa163950613b22293046aafad9 *unitTests/genomeWideScoringNoAccess.rda
d0c89c61267f0dc7f697f21beb39b087 *unitTests/test_Units.R
