2c7885835fdffc5101db74facc19adeb *DESCRIPTION
6266cd4977f900afcaf6a175785cdeff *INDEX
a383407f1190866aa9730e7c166858d4 *Meta/Rd.rds
b4a6b733b7f849d7b63dff877aed411a *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
52b5deff953384e995a580720372ee6c *Meta/hsearch.rds
17888efbd0a7b6bcd1c8946b3e646fc5 *Meta/links.rds
37d6f3b9288cd0a23d11f2b4c805edcc *Meta/nsInfo.rds
32f5180bb6fe62236cfd34daf3aff209 *Meta/package.rds
16e37ea4afa5b504d96d2b222dcd28fe *Meta/vignette.rds
f22c792c43684d8f72784c7dc6e5d3d3 *NAMESPACE
2ab266dc2d43775aa14ad711d1b68d78 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ChIPSeqSpike
8a88402f14f2bdd565f49adc15fe7d67 *R/ChIPSeqSpike.rdb
218d98612b162185d84b754a9ef61988 *R/ChIPSeqSpike.rdx
b25a6ef65708280681dd50fb7c27dfae *data/datalist
fade11720c5a57972e754b0f82ffc2bc *data/ratio.RData
798d46e8bbbc03aabeed3d10bd64ed9a *data/result_estimateScalingFactors.RData
509e53f9726711bcc54a026b819831f7 *data/result_extractBinding.RData
6e45b4d0099ed5c86a167e0ffd69865b *doc/ChIPSeqSpike.R
5b05e393cf652375d4bab055c4ecd4c8 *doc/ChIPSeqSpike.Rmd
3f9fc3d9398d2d77cda24e640dc2618f *doc/ChIPSeqSpike.pdf
0e47348204dd0833c3e9601098464a29 *doc/index.html
e1b0857cfa8b9dcb2985422937745d31 *extdata/bam_files/H3K79me2_0_dm3-filtered.bam
b68ec110a950b71a3b13baa15a5dec0a *extdata/bam_files/H3K79me2_0_hg19-filtered.bam
e59bb25fde9cda6353c2d9bbcabcaa3e *extdata/bam_files/H3K79me2_100_dm3-filtered.bam
80bd8e48d6dcda4d760ac1602c31cf9e *extdata/bam_files/H3K79me2_100_hg19-filtered.bam
d6725b83c9229d109a291c3e4b984e7c *extdata/bam_files/H3K79me2_50_dm3-filtered.bam
f3c641290c9b4376058edf23eb6f72ae *extdata/bam_files/H3K79me2_50_hg19-filtered.bam
b2e75b31f0316749aa36a3d9b7c4a761 *extdata/bam_files/input_0_hg19-filtered.bam
8b8148adb9f17d2736a37afedd48a7d6 *extdata/bam_files/input_100_hg19-filtered.bam
7673e3b31cb43524e138b75c1e159cbf *extdata/bam_files/input_50_hg19-filtered.bam
87573393051fa168552ed7cb39dfe7ef *extdata/bigwig_files/H3K79me2_0-filtered.bw
b39be71651fa682c7ca5e74471b99356 *extdata/bigwig_files/H3K79me2_100-filtered.bw
9484358670dca7886ac5c6b183633858 *extdata/bigwig_files/H3K79me2_50-filtered.bw
8a9d30626ddffebcfcb53d73f109debe *extdata/bigwig_files/input_0-filtered.bw
bf1a116f02a8b755d2090aefccd66726 *extdata/bigwig_files/input_100-filtered.bw
3b9df7633e8119547fcd288983cec485 *extdata/bigwig_files/input_50-filtered.bw
0d8a6330967fd2321f34c569b5c49c76 *extdata/empty_files/endoBam_empty.bam
0d8a6330967fd2321f34c569b5c49c76 *extdata/empty_files/exoBam_empty.bam
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/input.wig_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/inputwig_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/inputwig_empty.wig
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wig.file_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wigfile_empty-RPM.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wigfile_empty.bw
82f6c1a5a915e077d1d5e1fb8ffd5dbd *extdata/fastq_fasta_files/endo.fa
82f6c1a5a915e077d1d5e1fb8ffd5dbd *extdata/fastq_fasta_files/exo.fa
54b6999818010f2f7cb7bd8dec20bbe1 *extdata/fastq_fasta_files/reads1.fastq.gz
4ef102a93caa7e70a8bad42948847a75 *extdata/fastq_fasta_files/reads2.fastq.gz
a009a7951861bd4ba706d2ef0111e2b4 *extdata/info.csv
fdbd4dfbae936b378365d7e043376e5a *extdata/test_coord.gff
1d9f6c9669202dd4a146d02723e429c9 *help/AnIndex
3fb8918ed208c820d9b538eda2caa5c8 *help/ChIPSeqSpike.rdb
640845cd2f4986d6a61f6e9d5d65f888 *help/ChIPSeqSpike.rdx
4242c92c39902039faed632ea3ba6613 *help/aliases.rds
76c482f360b7504c205c7220716d5e16 *help/paths.rds
78029ca4bd5ac3664081a9c2745e02f6 *html/00Index.html
7b1541c49cc6e4ac1b677815b777ae2c *html/ChIPSeqSpikeCore.html
6f38162b2bfe13365f5ba9410af40e19 *html/ChIPSeqSpikeDataset-class.html
8d96308478d51c351e7ddcac8c4dd361 *html/ChIPSeqSpikeDatasetBoost-class.html
1ed9f49035e19c483577cf99c46136ac *html/ChIPSeqSpikeDatasetList-class.html
d66e851b0821516a80cf3947d75ee290 *html/ChIPSeqSpikeDatasetListBoost-class.html
60e8c5586ddef436618c9a5c31873766 *html/Experiment-class.html
63d3e668b003ce2876b759a48f757ba2 *html/ExperimentLoaded-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
6e7604138f762d7f3c7abe26920503a4 *html/averageBindingValues.html
ee0e87385e739a2a79d73a3c49beb87e *html/bigWigFile.html
5032f032aa70fcfab8f8cce875da165c *html/boxplotSpike.html
5a7f2c7919dc0fbe7daa7cd8dae00a01 *html/count.html
b59396c86a9a6a5227fd5da8c8123260 *html/datasetList.html
020bc9f2751499d8bdb541cbbaa93fe5 *html/estimateScalingFactors.html
c79abaae30f29c1c75d292b77b157742 *html/exoCount.html
36e08e4fd7d447489df32a9cc2d4fe49 *html/exogenousScalingFactor.html
b9fdaeb842e6c3dc882c0244203cd28c *html/experimentList.html
8635fa6e81f108d044c7994c89e418e1 *html/exportBigWigs.html
974e54522c35999cf821130838b4116d *html/extractBinding.html
e284278e5f5a8aa50d499e93b95359de *html/getAverageBindingValues.html
e988a9b91751c619e98c7c713d561ad6 *html/getBam.html
3ce934fa1bce68e2f8b245003f219f2c *html/getBigWigFile.html
1dc861e837309ba01b85616a79f3f4f4 *html/getCount.html
7a1dab879b1d96826e8136c98e59b36e *html/getDatasetList.html
a559fdc3ca763390629b9e862e96bcc6 *html/getExoCount.html
4cbdb5bbac90c88aee8425a00462bbe1 *html/getExogenousBam.html
374aa7a8e5911efdea8553d802a2e546 *html/getExogenousScalingFactor.html
754478317e84010f034c30bdf189a16d *html/getExpName.html
80d77fc4824ced328b8ca87b48271a62 *html/getExperimentList.html
696df90109dbcdf52755f55bd0d16056 *html/getExperimentListBigWigs.html
1141f7f7c7c31df37dc6ecf058616f81 *html/getLoadedData.html
73b03557804460955939f9ad1041cf07 *html/getMatBindingValues.html
d90d072437e6adb0c03bae8689ea51ad *html/getRatio.html
3e6fcedb162450b71940d4b3e40842a7 *html/getScalingFactor.html
9c1dfc99d80ae4cd90d3ff59db644115 *html/inputSubtraction.html
66d6fb0800c8b74fb46396d07b75d38e *html/matBindingValues.html
052e4f49a8faf8eae7dcdde4c4f272ad *html/plotCor.html
16953885722bd4b37f55642871799f79 *html/plotHeatmaps.html
a1e96719ad46ec7b047bfebb4b7dbd50 *html/plotProfile.html
3f9049af72a9fd74316dbb9d0caf51ec *html/plotTransform.html
30206af005fdaefbfb3d575b9248c8f3 *html/ratio.html
8eeb5f43ee8a676b79077133dd5984dc *html/result_data.html
146de9ceb8c191771b5febad6e8dea61 *html/scaling.html
a9ae7a6043f243e639358845c79a3802 *html/scalingFactor.html
2e1bd02107c8b5f6d3cfd1984ceced90 *html/spikeDataset.html
2b279862c2a72ed543278537afd12449 *html/spikePipe.html
2b358e33ca1a4dfc6aae904372bf2bc5 *html/spikeSummary.html
