indexFinder {CellNOptR} | R Documentation

## Finds the indices, in the model fields, of the species that are measured/inhibited/stimulated

### Description

This function finds the indices, in the model fields, of the species that are measured/inhibited/stimulated. It looks for their position in model$namesSpecies which has the same order as the rows of interMat and notMat, and therefore these indexes can be used there as well.

### Usage

    indexFinder(CNOlist, model,verbose=FALSE)

### Arguments

`CNOlist` | a CNOlist structure, as produced by makeCNOlist
`model` | a model structure, as produced by readSIF
`verbose` | do you want information about the cues and signals identities printed on the screen? Default if false but we would advise to set it to true when the function is called for the first time.

### Value

a list with fields:

`signals` | vector of indices of the measured species
`stimulated` | vector of indices of the stimulated species
`inhibited` | vector of indices of the inhibited species

### Note

For internal usage since version 1.3.28

### Author(s)

C. Terfve

### See Also

makeCNOlist, readSIF

### Examples

    data(CNOlistToy,package="CellNOptR")
    data(ToyModel,package="CellNOptR")
    indicesToy<-indexFinder(CNOlistToy,ToyModel,verbose=TRUE)

[Package CellNOptR version 1.30.0 Index]