CNOlist-methods {CellNOptR} | R Documentation

## List of CNOlist-class methods

### Description

CNOlist is a class with a set of methods described here below.

### Usage

`signature(x="CNOlist")`

### Getters

getCues

  Returns the cues (matrix) found in the `CNOlist`

getSignals

  Returns the signals (list of matrices) found in the `CNOlist`

getStimuli

  Returns the cues found in the `CNOlist`

getInhibitors

  Returns the inhibitors found in the `CNOlist`

getTimepoints

  Returns the timepoints found in the `CNOlist`

getVariances

  Returns the Variances (list of matrices) found in the `CNOlist`. Will be different from zero only if replicates were found in the MIDAS data. See `makeCNOlist`

### Setters

setSignals

  Set the signals. No sanity check!

### Other methods

compatCNOlist

  convert the instance CNOlist into the old-style returned by `makeCNOlist` that is a list. Used in the ODE package.

length

  returns length of CNOlist (number of time points)

randomize

  randomizes the signals matrice in a CNOlist. See `randomizeCNOlist` for details

show

  prints summary information

plot

  plot the CNOlist instance using the plotCNOlist function.

plot

  `signature(x="CNOlist", y="CNOlist")`: Please see the page of `plotCNOlist2` for more details.

readErrors

  `signature(object="CNOlist", filename="MIDAS-file")`: reads measurement error corresponding to the data from the MIDAS file and updates the CNOlist object

writeErrors

  `signature(object="CNOlist", filename="string",overwrite=F)`: writes measurement error corresponding to the data from the CNOlist to a MIDAS file

### Author(s)

T.Cokelaer

### See Also

`CNOlist-class`, `randomizeCNOlist` `makeCNOlist`

### Examples

    showClass("CNOlist")

    data(CNOlistToyMMB, package="CellNOptR")
    cnolist = CNOlistToyMMB

    # In version 1.3.30 and above, use the plot method instead of former plotCNOlist function.
    plot(cnolist)
    # In version 1.5.14 and above, use getters instead of the @ operator
    getCues(cnolist)

    # others:
    new_cnolist = randomize(cnolist)

[Package CellNOptR version 1.30.0 Index]