9a0553cc15a8a4ab6fbbae1eb03ad503 *DESCRIPTION
45ca093c42c763eed94e0db0b1b9d03c *INDEX
2f3fdaeed66e6be1a261ff9cd1e63c18 *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
7d5ac41c1812c102803e2287dbfc503b *Meta/hsearch.rds
c2ec664add5c97f1809f9c8c9a1d87f2 *Meta/links.rds
aad8b48ce173a232875aa1e07b13884e *Meta/nsInfo.rds
cab63450d4bfc441c86fd89e051306ed *Meta/package.rds
a710b9c0e3f81499adb9f1f764f0b694 *Meta/vignette.rds
08758e948f8fd6da2a8cf92ab036b105 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/CausalR
558da2cbb0665819f6f04a510934ac80 *R/CausalR.rdb
d836e53dfb587c526a64c40b76c14a47 *R/CausalR.rdx
75a0105e9ea7befc141e045a7d1cf5f7 *doc/CausalR.R
de74917eb477872e8e44efdad02ad784 *doc/CausalR.pdf
d25e999e4973f96c3bec90f95bb8a7a9 *doc/CausalR.rnw
3eb3b861b47cbb5b43413f2cc9876806 *doc/index.html
d0c4d2301234bafb36c5ada77a8f88da *extdata/testData.txt
5aa80e0e5bc1159c049304ee9aade184 *extdata/testData1.txt
4164dc49f6ad3051c6a1719ca775c6ac *extdata/testNetwork.sif
a3452071c00c0afea656573a57f76602 *extdata/testNetwork1.sif
4626353beff91bb0c7edc2bc3648c612 *help/AnIndex
a08c70bd2ecf3709af3fa1e7feeb7050 *help/CausalR.rdb
9d55d64b1b58011ae2429f9d10ec9c89 *help/CausalR.rdx
a51ac968505353cd5d8f608dd8de234e *help/aliases.rds
fd667442a13e9d2ad07ff1e1afdc4552 *help/paths.rds
b13bc5b30eea8ea22609430ad236db10 *html/00Index.html
38a2f2fa7cc44fb2d48d26e2fbbee58d *html/AddIDsToVertices.html
80db5750585d2a6be838b11a35a0ddb4 *html/AddWeightsToEdges.html
fa66e57a245770b5ec25beabb4f8da5b *html/AnalyseExperimentalData.html
75b912d594310ccd28adbf4c777bc744 *html/AnalysePredictionsList.html
65628f8e99b2cfe58c58852621a4bb8c *html/CalculateEnrichmentPValue.html
0609185c8f1e2b054b3f84ba8ef62423 *html/CalculateSignificance.html
e88e79724e1b2f9b51ef45757462f6b7 *html/CalculateSignificanceUsingCubicAlgorithm.html
8547e18e57e97e5c90a892fd68ac2c15 *html/CalculateSignificanceUsingCubicAlgorithm1b.html
965b2d57305d0ff5a05f9ee0ff1f59fb *html/CalculateSignificanceUsingQuarticAlgorithm.html
00fd5de2f437a71099475173fb3f680c *html/CalculateTotalWeightForAllContingencyTables.html
2f3e77b86a0961c9fbbd96cd84d45997 *html/CalculateWeightGivenValuesInThreeByThreeContingencyTable.html
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3839abc5de8dd4320c92bd8f87c7f63f *html/CheckPossibleValuesAreValid.html
24d9d179a39a009a61a68a75544136c7 *html/CheckRowAndColumnSumValuesAreValid.html
58267568d4fe0bc2d15ed706ee12a62d *html/CompareHypothesis.html
811d779288198f8fd42936d7116377f2 *html/ComputeFinalDistribution.html
30f978bc87cd16a80beae3a4900f9ffd *html/ComputePValueFromDistributionTable.html
373c70e0c03000861741393cc97b74ff *html/CreateCCG.html
abffec86bb61d0d61677506975a67a3e *html/CreateCG.html
2c09395ef1ed5244e87c50f8d29da072 *html/CreateNetworkFromTable.html
012a197083c09a8353eeaaec7a994cda *html/DetermineInteractionTypeOfPath.html
36907ac9265906c06364cc6dfc92e440 *html/FindApproximateValuesThatWillMaximiseDValue.html
f56ae149361532a8b83177b0eadce408 *html/FindIdsOfConnectedNodesInSubgraph.html
471b3fead4c6f50c42ccdc2ab88a694f *html/FindMaximumDValue.html
271dec3590a583ebb1cf1a46641f2fee *html/GetAllPossibleRoundingCombinations.html
7ad3c84f312153a7dbcb9ac0255d390a *html/GetApproximateMaximumDValueFromThreeByTwoContingencyTable.html
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1c6a8134711b39568d02b1f627e14ac4 *html/GetCombinationsOfCorrectandIncorrectPredictions.html
77d83d83b556a39c77df0450179b2613 *html/GetExplainedNodesOfCCG.html
682eb6144a1895dc6bf16ef034ce4ab0 *html/GetInteractionInformation.html
a41c85ba1b77720b0bf8d8e21d632740 *html/GetMatrixOfCausalRelationships.html
3b02878ca673baeaa5d1e6dd77d64f68 *html/GetMaxDValueForAFamily.html
aef98e2e5766036b32abdf8d7e124203 *html/GetMaxDValueForAThreeByTwoFamily.html
0f9843d9030b698d884210cc59524ceb *html/GetMaximumDValueFromTwoByTwoContingencyTable.html
48133c078c37473cf8934fe3243ed6f6 *html/GetNodeID.html
6cec6f0ca700c1f055dcdf8dcc121110 *html/GetNodeName.html
64ac1b0e7a920d2213550816d93a3ee5 *html/GetNumberOfPositiveAndNegativeEntries.html
51ec4be2da7d5ec35f842d69a3a56d58 *html/GetPathsInSifFormat.html
0bf06f11343ce5928a31b813925019f6 *html/GetRegulatedNodes.html
7a5e153c554c40249deb29d5b7a437fc *html/GetRowAndColumnSumValues.html
8ca6c8814b005a0624ab01dd35104bcc *html/GetScoreForNumbersOfCorrectandIncorrectPredictions.html
8ed9b70c160de5f8d6b3d324d43b0a3c *html/GetScoresForSingleNode.html
00efb3bc5e3ad0948f5f941143e8a44e *html/GetScoresWeightsMatrix.html
b4650ef39bcaa43a57cc1923b2adb648 *html/GetScoresWeightsMatrixByCubicAlg.html
7726b7c76d9b04cdf2346692e7676ffc *html/GetSetOfDifferentiallyExpressedGenes.html
cc50e9a89091c16a8be4cfe17f19e471 *html/GetSetOfSignificantPredictions.html
4a0a831637e7bcdfcb6b1a1b48db79c0 *html/GetShortestPathsFromCCG.html
16de18be7c7b287626c15c1dc7076765 *html/GetWeightForNumbersOfCorrectandIncorrectPredictions.html
bcc818b0daf35b6f188160bf3314e456 *html/GetWeightsAboveHypothesisScoreAndTotalWeights.html
1b2b25b3f370a24ed363eaeafa5ede00 *html/GetWeightsAboveHypothesisScoreForAThreeByTwoTable.html
0f4845e9771218313243d8fcfd572a92 *html/GetWeightsFromInteractionInformation.html
7be05aabd13413fd7ad03ed19f126d16 *html/MakePredictions.html
8f123c96034f8e741c43258194965f5d *html/MakePredictionsFromCCG.html
5d2439facaede6ad15ea2a428f9316ad *html/MakePredictionsFromCG.html
4801e2eda8de0aba83572d7df109b1a8 *html/OrderHypotheses.html
251337036dce34e0ddd96c6e64d01933 *html/PlotGraphWithNodeNames.html
ea63be0f9e6b58a3953950857778ad72 *html/PopulateTheThreeByThreeContingencyTable.html
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5c541258d5af052c44c8b4d0a8cfeebf *html/ProcessExperimentalData.html
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9730501988fda73c6ed1727d5da6daa5 *html/ReadExperimentalData.html
e7ef81d86704aadd4a0a49523e363c73 *html/ReadSifFileToTable.html
9b8a6cc027dc4a62e104e579c2ea0e9c *html/RemoveIDsNotInExperimentalData.html
c4730a03aaa8db395aed7869ec7e1b87 *html/ScoreHypothesis.html
7ccf2690407e768aa55213cb004dae0d *html/ValidateFormatOfDataTable.html
3f5eb440938bf08790a855cddd671b34 *html/ValidateFormatOfTable.html
1198be6b76319c9cbe4c6e01fbb90f3f *html/WriteAllExplainedNodesToSifFile.html
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4ef7d85cb815b3a5fa2869f502a0a3cc *html/runRankHypothesis.html
ebcaf01ead2517ae396da8aeab7bfad3 *html/runSCANR.html
34ba6c40f4d189fc99b88eea72d43077 *testData/CCGWithTwoLevels.txt
8298393b0899876e589e05349667c3a9 *testData/network_with_conflict.sif
a560534fa5030bf2338d965592ff160a *testData/network_with_difflength_conflict.sif
6d6cd90f38a2c10d5ea28e2742e9e249 *testData/network_with_loop.sif
4b090fddaad7c4df93b2ba0e9d276956 *testData/test_ExperimentalData.txt
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34ba6c40f4d189fc99b88eea72d43077 *unitTests/CCGWithTwoLevels.txt
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123c67a8afb825b021a9864f60e10fd2 *unitTests/CreateSimpleNetworkForTest_ComputationalCausalGraphCreator.r
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8f2c55d9f885e12400a6474b92a2e86d *unitTests/DetermineInteractionTypeOfPath.r
51ac92a1439355520e9e7a9e026ea4e7 *unitTests/GetMatrixOfCausalRelationships.r
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de42cd056886cb0cbc12c8ac76e307aa *unitTests/test_CausalReasoningPredictions.R
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48331a4b2428088bc8716c280ca71c4c *unitTests/test_CubicAlgorithm1b.R
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4b090fddaad7c4df93b2ba0e9d276956 *unitTests/test_ExperimentalData.txt
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7c77c3e9fe79949ae368cd11d2ce2a71 *unitTests/test_HypothesisScorer.R
906ee2fc04f414d125db71aa0f1bc75b *unitTests/test_InputNodes.txt
022897eb86432e7f37be347b33452a38 *unitTests/test_NodeInclusionFile.txt
be16cdee1cf02a44b44505e2c1ff5efb *unitTests/test_QuarticAlgorithm.R
ecefa26f7be645f06429b17e7d248f52 *unitTests/test_RankTheHypotheses.R
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b7ef184bc3fda30c1eda36c9353258d2 *unitTests/test_SignificanceCalculator.R
202353c19c4305c7893412836c6b3875 *unitTests/test_WriteExplainedNodesToSifFile.R
f4896b64aedcde1b431e8e7452a3db8a *unitTests/test_network.sif
