openCVE {CVE} | R Documentation

## Open Cancer Variant Explorer (CVE) Shiny app

### Description

The openCVE function opens the CVE Shiny app. The function to supplement the R package with the Shiny app was suggested by Dean Attali (http://deanattali.com). Currently, the only extension available is a melanoma co-expression network (WGCNAmelanoma).

### Usage

    openCVE(x, sample_names = NULL, extension = FALSE)

### Arguments

`x` | A dataframe (for single file) or list (for multiple oncotator output files)
`sample_names` | A character vector with sample name(s)
`extension` | A character vector of extention name

### Examples

    openCVE(crcCase,"case study")
    openCVE(melanomaCase,"case study WGCNA",extension="WGCNAmelanoma")

[Package CVE version 1.10.0 Index]