GS_UV                   UV signature gene significance (GS)
GS_Vem                  Vemurafenib resistance gene significance (GS)
GS_lscore               Lymphocyte score gene significance (GS)
GS_pmet                 Primary vs metastasis gene significance (GS)
GS_survival             Survival gene significance (GS)
METree_GO               Gene tree of co-expression network
MM                      Module membership
MS_UV                   UV signature module significance (MS)
MS_UV_bar               UV signature module significance scaled for
                        barplot
MS_Vem_bar              Vemurafenib resistance module significance
                        scaled for barplot
MS_lscore               Lymphocyte score module significance (MS)
MS_lscore_bar           Lymphocyte score module significance scaled for
                        barplot
MS_pmet                 Primary vs metastasis module significance (MS)
MS_pmet_bar             Primary vs metastasis module significance
                        scaled for barplot
MS_survival             Survival module significance (MS)
MS_survival_bar         Survival module significance scaled for barplot
MS_vem                  Vemurafenib resistance module significance (MS)
crcCase                 Example Oncotator output for the single-patient
                        colorectal cancer sample
genes_WGCNA             Top 5000 most variant genes in TCGA RNAseq data
get.oncotator.anno      Open Cancer Variant Explorer (CVE) Shiny app
label_order             Label order of co-expression modules
melanomaCase            Example Oncotator output for the melanoma
                        cohort study described in the paper
modules                 Module assignment of top 5000 most variant
                        genes in TCGA RNAseq data
openCVE                 Open Cancer Variant Explorer (CVE) Shiny app
