getgc {CODEX} | R Documentation

## Get GC content for each exonic target

### Description

Computes GC content for each exon. Will be later used in QC procedure and normalization.

### Usage

    getgc(chr, ref)

### Arguments

`chr` | Chromosome returned from `getbambed`
`ref` | IRanges object returned from `getbambed`

### Value

Vector of GC content for each exon.

### Author(s)

Yuchao Jiang yuchaoj@wharton.upenn.edu

### References

Team TBD. BSgenome.Hsapiens.UCSC.hg19: Full genome sequences for Homo sapiens (UCSC version hg19). R package version 1.3.99.

### See Also

`getbambed`, `qc`, `normalize`

### Examples

    ref <- IRanges(st = 51207851, end = 51207982)
    gc <- getgc(chr = 22, ref)

[Package CODEX version 1.16.0 Index]