Package: CNVRanger
Version: 1.0.3
Title: Summarization and expression/phenotype association of CNV ranges
Author: Ludwig Geistlinger [aut, cre], Vinicius Henrique da Silva [aut],
    Marcel Ramos [ctb], Levi Waldron [ctb]
Maintainer: Ludwig Geistlinger <ludwig.geistlinger@sph.cuny.edu>
Depends: GenomicRanges, RaggedExperiment
Imports: BiocParallel, GDSArray, GenomeInfoDb, Gviz, IRanges,
        S4Vectors, SNPRelate, SummarizedExperiment, data.table, edgeR,
        gdsfmt, grDevices, lattice, limma, methods, plyr, qqman,
        rappdirs, reshape2, stats, utils
Suggests: AnnotationHub, BSgenome.Btaurus.UCSC.bosTau6.masked,
        BiocStyle, MultiAssayExperiment, TCGAutils, curatedTCGAData,
        ensembldb, knitr, regioneR, rmarkdown
Description: The CNVRanger package implements a comprehensive tool suite for CNV analysis.
    This includes functionality for summarizing individual CNV calls across a population,
    assessing overlap with functional genomic regions, and association analysis 
    with gene expression and quantitative phenotypes.
License: Artistic-2.0
BugReports: https://github.com/waldronlab/CNVRanger/issues
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: CopyNumberVariation, DifferentialExpression, GeneExpression,
        GenomeWideAssociation, GenomicVariation, Microarray, RNASeq,
        SNP
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/CNVRanger
git_branch: RELEASE_3_9
git_last_commit: ef38e11
git_last_commit_date: 2019-07-16
Date/Publication: 2019-07-17
NeedsCompilation: no
Packaged: 2019-07-18 05:22:09 UTC; biocbuild
Built: R 3.6.0; ; 2019-07-18 12:38:42 UTC; windows
