bafLikelihood {CNPBayes} | R Documentation

## Calculate the likelihood of the observed B allele frequencies for a given copy number model

### Description

Calculate the likelihood of the observed B allele frequencies for a given copy number model

### Usage

    bafLikelihood(cn.model, snpdata)

### Arguments

`cn.model` | a copy number model
`snpdata` | a `SummarizedExperiment` with assay element 'GT' containing an integer coding (1, 2, and 3) for the generic genotypes AA, AB, and BB, respectively.

### Value

a list. The first element is the log likeihood and the second element is the copy number model that maximized the likelihood.

[Package CNPBayes version 1.13.5 Index]